Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00614 ATGAACTCCAAACTCAACTCGCCCGGAGCTTTCACCTCCCATTTTCCCTTCTTCGTCTCCGGCTCCGGCTCCACGTTTGCTGGTGCTGCTTCTTTGGAAGCTACTGCTCTGGCTTTCAAACGCCACCACCAGAATCCTCGCCGGAAGCGGTCAAAAATGATGAGAATTGACGACCATCCGGCTGCTGGGTCCGGTTTAAGCAGCCTTTCGAAGCAGAAATACGCCAAAAAGCCTGACCCGAACGCACCCAAAATCACCAGACCTTGTACCGAATGTGGGAAAGAGTTTTGGTCGTGGAAAGCGCTTTTTGGCCACATGAGGTGCCATCCTGAACGGCAATGGCGAGGTATAAACCCACCGCCGAATCTCCGGCCACCAAATATCTACCCCTTTAGCGATTTGGAATCTATGACAGAAGAAGAAAAGGAGGTTGCTGCGTGTTTACTTCTACTAGCAACGACTCCAACCGCCATTGGCTACTGCGCCGACCCGTCTCGCCGATCGTTCGAGTGCTCGAGTTGCAAGAAAGTGTTTGGATCACACCAGGCTCTGGGCGGCCACAGAGCGACTCACAAGAACGTGAAAGGCTGCTTCGCCATAACGAGAAATGGTTCGGAGCCCGAAGACGATGGGATGGGCGAGCGAGAGAGGGATACATCTGCGGAGGAGAAGACGGCGGTGGCGTTCAGCCCAGGTGGACACAGGTACAGTATTTGTACGAGGGTTTTCTCTAGTGGGCAAGCACTAGGTGGGCATAAGAGATGCCACTGGGAGAATAGCGAGGATCCGCCATTGGTGAGCCCTTTTGTTTCTTCTTCTGCAAGAGAAGGTTGTGGACATTTAGATTTGAATTTGCCTCCGCCATCGGAGGATGAATGCTCCTCATCTTCTCATTCTTCTTTCCTAACTCTGGATTTAAGGTTGGGTCTATGA 933 52.3 MNSKLNSPGAFTSHFPFFVSGSGSTFAGAASLEATALAFKRHHQNPRRKRSKMMRIDDHPAAGSGLSSLSKQKYAKKPDPNAPKITRPCTECGKEFWSWKALFGHMRCHPERQWRGINPPPNLRPPNIYPFSDLESMTEEEKEVAACLLLLATTPTAIGYCADPSRRSFECSSCKKVFGSHQALGGHRATHKNVKGCFAITRNGSEPEDDGMGERERDTSAEEKTAVAFSPGGHRYSICTRVFSSGQALGGHKRCHWENSEDPPLVSPFVSSSAREGCGHLDLNLPPPSEDECSSSSHSSFLTLDLRLGL 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7191697 7192722 - Bda001532.1 Bda13g00614 18745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00614 310 MobiDBLite consensus disorder prediction 207 222 - -
Bda13g00614 310 MobiDBLite consensus disorder prediction 201 222 - -
Bda13g00614 310 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Bda13g00614 310 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 36 310 - -
Bda13g00614 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Bda13g00614 310 MobiDBLite consensus disorder prediction 39 82 - -
Bda13g00614 310 Pfam C2H2-type zinc finger 88 111 - -
Bda13g00614 310 Pfam C2H2-type zinc finger 237 258 - -
Bda13g00614 310 Pfam C2H2-type zinc finger 169 192 - -
Bda13g00614 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Bda13g00614 310 SUPERFAMILY beta-beta-alpha zinc fingers 88 191 IPR036236 -
Bda13g00614 310 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 36 310 - -
Bda13g00614 310 SMART c2h2final6 169 191 IPR013087 -
Bda13g00614 310 SMART c2h2final6 87 109 IPR013087 -
Bda13g00614 310 SMART c2h2final6 234 256 IPR013087 -
Bda13g00614 310 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Bda13g00614 310 Gene3D Classic Zinc Finger 87 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00315 Bda-Chr13:4020064 Bda13g00614 Bda-Chr13:7191697 2.87E-30 dispersed
Bda13g00614 Bda-Chr13:7191697 Bda11g00425 Bda-Chr11:4511861 2.52E-29 dispersed
Bda13g00614 Bda-Chr13:7191697 Bda06g00439 Bda-Chr6:6461659 1.30E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16894 PF13912 zf-C2H2_6 2.20E-08 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00614 - - jre:108997351 283.493