Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00619 ATGGAATTCTCTTTGATTGGGAAGACTGGTCATATCTTTATGAGTAGAACACTTCTCGTGTTCAGTTTGCATATGTGGCTGCTATTTGCAGTAATGGGTGGGACTGGAAATGAGAGTGCTTTGCCAAGTGTAGTGAATATTGGAGCTTTGTTTACGTTTGACTCGGTTATTGGAAGGTCAGCAACGCCAGGAATTTTAGCTGCAGTTGATGATGTAAATGCCAATACAACTGTACTTCCACATGTTAAGTTGAACGTGATCTTACACGATACGAATTGCAGTGGATTTCTAGGAACTGTGGAAGCTTTGCAGCTAATGGACGCCGAAGTTGTTGCTGCGATTGGTCCACAATCCTCTGGAATATCTCATGTTATTTCCAATGTGGTCAATGAACTCCAAGTACCGCTTCTATCATTTGGATCAACAGATCCCACCCTTTCAGCGCTACAATTCCCGTATTTTGTCAGGACAACACAGAGCGATTATTTTCAGATGAAAGCAATTGCTGATCTGATAGATTATTACGGATGGAGGGAGGTCATTGCTGTATTTGTCGATGACGATTATGGAAGAAATGGGATATCAGTCTTAGGCGATGCACTTGCTAAGAAGCGGGCCAAAATTTCTTATAAGGCGGCTTTCTCTCCCGGAGCCTCTAGAAGTGATATTAGTGACTTGTTGGTTGAGGTAAATCTCATGGAATCTCGCGTATATATCGTTCATGTCAATCCTGACTCTGGTTTGTCGGTATTTACTGTTGCAAAGAGTCTTGGAATGATGGGTCCTGGCTATGTGTGGATTGCAACAGATTGGCTTTTTTCTTTTCTTGATTCGTCAGAAACAGCTAGCTCGGATGCAATGAATCTCATACAAGGAGTTGTTGCTCTTCGCCACCACATTCCTGACAATGATCTGAGAACAAAAATCGCGTCGAAATGGAAGAATCTGAACTACAGCTCGACTATAAACTTAAATACTTATGCACTTTATGCATATGACTCTGTTTGGTTGGCAGCCCATGCTCTTGATGCTTTTTTCAGGGAAGGTGGGAATATATCTTTCTCCAATGACCCGCGGCTGCATGAAACAAATAAAAGTGTGCTTCATTTAACATCCCTCCGCATTTTCGACGGCGGGAAACAACTTCTACAAACCATTTTAAGTACAAACTTCACTGGTCTGAGTGGTCAGATTCAATATGATCGAGAGAAAAACTTGGTTCATCCAGCATATGATATTCTCAACATTGGCGGAACTGGTTCTCGTAGAGTTGGTTATTGGTCAAATCATTCCAGTTTATCAACTGTTCCTCCCGAAACTTTATATATGAGGCCATTCAACAGTTCTTCAAGAAGTCAAGGTCTTTACAGTGTAATATGGCCCGGTGAAACGACAGCGACTCCTCGTGGATGGGTATTTCCAAACAACGGAAAGCCCCTTCGGATTGCAGTACCATACAGAGTGAGTTACAAAGAATTTGTATCGAAAGACTCAAACCCTCCTGGGGTTAAAGGATTCTGTATTGATGTTTTTGAGGCTGCTGTAAACTTGTTGCCTTATCCGGTTCCTCGTGAGTTTATATTATACGGAGACGGAAAGGAAAATCCTTCTTACAATAATATTGTTTATGATGTTTATCAAAATAAATTTGATGCTGCTGTTGGGGATGTTACGATCGTGACAAATCGGACGAAGATCGTGGACTTCACTCAGCCTTTCATGGAGTCTGGACTTGTCGTAGTTGCTCCCGTCAAACAATCCAAGTCCAATCCTTGGGCTTTCCTCAGCCCTTTCACAGTCCAAATGTGGTTTGTCACTGCTGGTTTCTTCCTTTTTGTAGGAGCAGTTGTCTGGATTCTTGAGCATCGTATTAATCAAGAATTTCGCGGCCCACCTCGACAGCAACTCATAACGATATTTTGGTTCAGTTTTTCAACAATGTTTTTTTCCCACAGAGAAAACACAGTGAGCACTCTTGGCCGATTTGTACTGCTGATATGGCTATTTGTCGTTTTAATTATTAATTCAAGTTACACTGCCAGCCTGACGTCGATCCTTACAGTGCAACAGCTGACGTCGAAGATCGAAGGGATTGATACCTTAATATCGAATACTGAACCGATTGGAATTCAAGTGGGATCCTTTGCTTATAATTATTTGACTGAGGAATTGAATATTGCACCATCTAGGATCATTAAGTTGAACGGGCAGGAAGAATATAGCAGTGCTCTCCAGAGAGGACCCGCAGGCGGTGGTGTGGCTGCCATTGTCGACGAGCTTCCGTATGTCGAGCGATTTTTGACTGGCACCAACTGTGCATTCAGGACTGTCGGGCAAGAGTTCACGAAAAGCGGATGGGGTTTTGCGTTCCAGAGGGACTCTCCGCTGGCCGTCGATTTATCGACTGCGATTCTTCAACTCTCGGAGAACGGCGATCTTCAGAAGATTCACGATAAATGGCTCTCGACTTCTCAATGCTCTATGCAGCTAAACCAACTTACAATTGTTCATTTTCCGATTTGTCTTTTGAAGGAGAAGTACGTGGGGAATGAGATTGAAAAAATCGGTACGAAGTCGAGAGGATTAAATTTGATGGATAAAACATTGATGGTAGGAGGCGCACGTCTCTCTTACAGCCTCTGGGAAGTAGGAGGGGATAAACGATCAGAGCATCATATTCCAGTTGCTTGTAAAGACTCTGTTGCAATCTTCTTCATGTTTGATCTAACAAGCCGGTGTACCTTAAATAGTGTCATGAGGTGGTACCATCAAGCTAGGAAATGGAACCAGACGGGTATACCCATTTTGATCGGATCAAAATATGATGATTTTATCCAACTCCCCATCGATTTACAGAGGACGATTGCAAGTCAGGCAAGAGCATATGCAAGGGCCATTAATGCAACTCTGTTCTTCTCGAGCGCAGCCTACAACATAAACGTCAATAAAATCTTCAAATTCATAACTGCGAAGCTCTTCGATTTGCCATGGACGGTGGAGCGAAACTTGAACATTGGAGAACCCATTATTGATTACTAA 3039 42.71 MEFSLIGKTGHIFMSRTLLVFSLHMWLLFAVMGGTGNESALPSVVNIGALFTFDSVIGRSATPGILAAVDDVNANTTVLPHVKLNVILHDTNCSGFLGTVEALQLMDAEVVAAIGPQSSGISHVISNVVNELQVPLLSFGSTDPTLSALQFPYFVRTTQSDYFQMKAIADLIDYYGWREVIAVFVDDDYGRNGISVLGDALAKKRAKISYKAAFSPGASRSDISDLLVEVNLMESRVYIVHVNPDSGLSVFTVAKSLGMMGPGYVWIATDWLFSFLDSSETASSDAMNLIQGVVALRHHIPDNDLRTKIASKWKNLNYSSTINLNTYALYAYDSVWLAAHALDAFFREGGNISFSNDPRLHETNKSVLHLTSLRIFDGGKQLLQTILSTNFTGLSGQIQYDREKNLVHPAYDILNIGGTGSRRVGYWSNHSSLSTVPPETLYMRPFNSSSRSQGLYSVIWPGETTATPRGWVFPNNGKPLRIAVPYRVSYKEFVSKDSNPPGVKGFCIDVFEAAVNLLPYPVPREFILYGDGKENPSYNNIVYDVYQNKFDAAVGDVTIVTNRTKIVDFTQPFMESGLVVVAPVKQSKSNPWAFLSPFTVQMWFVTAGFFLFVGAVVWILEHRINQEFRGPPRQQLITIFWFSFSTMFFSHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDTLISNTEPIGIQVGSFAYNYLTEELNIAPSRIIKLNGQEEYSSALQRGPAGGGVAAIVDELPYVERFLTGTNCAFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSTSQCSMQLNQLTIVHFPICLLKEKYVGNEIEKIGTKSRGLNLMDKTLMVGGARLSYSLWEVGGDKRSEHHIPVACKDSVAIFFMFDLTSRCTLNSVMRWYHQARKWNQTGIPILIGSKYDDFIQLPIDLQRTIASQARAYARAINATLFFSSAAYNINVNKIFKFITAKLFDLPWTVERNLNIGEPIIDY 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7223594 7229536 + Bda001537.1 Bda13g00619 18750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00619 1012 CDD PBP1_GABAb_receptor_plant 46 437 IPR044440 -
Bda13g00619 1012 Pfam Bacterial extracellular solute-binding proteins, family 3 493 822 IPR001638 -
Bda13g00619 1012 Gene3D - 475 590 - -
Bda13g00619 1012 Gene3D - 841 1002 IPR027417 -
Bda13g00619 1012 SUPERFAMILY Periplasmic binding protein-like II 455 822 - -
Bda13g00619 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 858 1005 IPR027417 -
Bda13g00619 1012 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 834 - -
Bda13g00619 1012 Gene3D - 160 432 - -
Bda13g00619 1012 CDD GluR_Plant 478 821 - -
Bda13g00619 1012 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 331 343 - -
Bda13g00619 1012 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Bda13g00619 1012 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Bda13g00619 1012 Gene3D - 591 724 - -
Bda13g00619 1012 Pfam Ras family 846 992 IPR001806 GO:0003924|GO:0005525
Bda13g00619 1012 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Bda13g00619 1012 Gene3D - 770 828 - -
Bda13g00619 1012 Gene3D - 67 408 - -
Bda13g00619 1012 PANTHER GLUTAMATE RECEPTOR 3.4 34 834 - -
Bda13g00619 1012 SUPERFAMILY Periplasmic binding protein-like I 39 471 IPR028082 -
Bda13g00619 1012 Pfam Receptor family ligand binding region 64 417 IPR001828 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00363 Bda13g00619 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00980 Bda-Chr11:9538303 Bda13g00619 Bda-Chr13:7223594 0 dispersed
Bda13g00619 Bda-Chr13:7223594 Bda13g01579 Bda-Chr13:39292530 5.73E-134 dispersed
Bda07g00348 Bda-Chr7:4511629 Bda13g00619 Bda-Chr13:7223594 5.58E-75 transposed
Bda13g00619 Bda-Chr13:7223594 Bda06g00362 Bda-Chr6:5820368 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00619 K05387 - qsu:112026600 1281.93