Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00653 ATGGAAAATTTGTTGGCACTAACTACCCTGCGATTGCAGACCAATCAGCTGTCTGGTACACTTGATGTTTTGCAAAATCTGCCACTCAAAGATTTGAATATAGAGAACAATCTTTTTTCTGGCCCCATACCTGTGACGCTACTGAACATCCCAAGTTTCAGAAATGATGGAAATCCATTCAATTCTTCTGTTTCTCCAGTACCTCCTCCTTCACCCCCATCGAAACAATCACCAGTGCCTTTCTTTTCTGGAGAACCATCTTCAGAAGAATCACCAGAAAAGCCAGCTGACGGACCATCGTTGCCAAATGAATCAAAATCTGGAACTTTTTTAACTACCAAAAAGGTCGTTTGGCTATCAATTGCTGGGGTTTTGTCGTTTATAATTTTTGCATTAGTGCTTGTGCTATTCATGCCAAGGTGTATCAGAGGAAGTAGAGAGGTTGGCAGAAATTTTAAGCGGCATCAAATTGGTGCATACAAAGGTGACAAAGAGAGCCCCAAGAATGATATGCCCTCTACCCAACCAATCAATAAAATCCAGAGAGTTCCAAAAGATGCTGTTGGGAAGCCAAAGGAAGGTTATCAATCAGAGACTCAGAGAATAGGAGTGATACCAGAACGGAAGACGCCAAAGCAGGATGAGCATGAGATGGATATTAGTGCTCTGGATGACTATTTTATTCCTCCCCCTCCCCCATCATGTCCAGTAAAGGTCATTAAGGAGCCCTTTATTCAAACTGAAGTGACTCCAATGAAGCCTTCGCCCACAAAATTAAACACCCCCACTTTCGCAAAGTCTTTCACTATTGCATTCCTTCAGCAATGTACAAACAGTTTCTCTCAAGAAAATCTAATAGGAGGAGGAATGCTGGGGAACGTTTATAGGGCAATGGTACCTAATGGAAAGCTGCTTGCTGTGAAGAAACTAGATAAGAGGAGTTGTAGTCAACAAAAGGATGATGACTTTCTTGAAATGGTGAATAATATCGATCTGATACGCCATCATAATATTGTGGAGCTCAGGGGTTACTGTGCAGAACATGATCAAAGACTGCTTATCTATGAGTACTGTAATAATGGTACCCTGCAAGATGCATTGCACTACGACAATGAAACTAAAAAAAATCTTTCTTGGAACATCCGCATACAGATGGCTCTTGGAGCTGCTAGAGCCTTGGAGTATCTGCACGAGGTCTGTCAGCCTCCGGTTATGCATAGAAATTTTAAGTCTGTCAATATTCTCCTCGATCATGACTATGCCGTCCGTGTCTCTGATTGTGGTTTATCTCCACTTATATCATCAGGCTCTGTCAGTCAGTTGTCTGGCCATCTGCAATCTGTGTATGGATGGGGAGCTCCAGAATATGAGTTGGGAACTTACACTTTGAAGAGCGACGTTTACAGCTTTGGCGTGGTAATGTTGGAACTTTTGACAGGCCGGATGTCGTATGACAGAACGAGGATCCGAGGAGAACAATTTCTGGTTAGATGGGCGATTCCGCAGCTTCATGACATCAATGCATTGTCAAGAATGGTCGACCCTTCTCTCGGTCTTCATTACCCACCGAAATCCTTATCACACTTCGCGGACATCATATCTCGTTGCGTTCAGTCTGAGCCAGAATTCAGGCCAGCAATGTCTGAAGTCGTACAGGATCTGGTAGACATGATAAGAAGAGAGCCTCATGGGAGTGGATTGGCCGAACACTGA 1713 43.43 MENLLALTTLRLQTNQLSGTLDVLQNLPLKDLNIENNLFSGPIPVTLLNIPSFRNDGNPFNSSVSPVPPPSPPSKQSPVPFFSGEPSSEESPEKPADGPSLPNESKSGTFLTTKKVVWLSIAGVLSFIIFALVLVLFMPRCIRGSREVGRNFKRHQIGAYKGDKESPKNDMPSTQPINKIQRVPKDAVGKPKEGYQSETQRIGVIPERKTPKQDEHEMDISALDDYFIPPPPPSCPVKVIKEPFIQTEVTPMKPSPTKLNTPTFAKSFTIAFLQQCTNSFSQENLIGGGMLGNVYRAMVPNGKLLAVKKLDKRSCSQQKDDDFLEMVNNIDLIRHHNIVELRGYCAEHDQRLLIYEYCNNGTLQDALHYDNETKKNLSWNIRIQMALGAARALEYLHEVCQPPVMHRNFKSVNILLDHDYAVRVSDCGLSPLISSGSVSQLSGHLQSVYGWGAPEYELGTYTLKSDVYSFGVVMLELLTGRMSYDRTRIRGEQFLVRWAIPQLHDINALSRMVDPSLGLHYPPKSLSHFADIISRCVQSEPEFRPAMSEVVQDLVDMIRREPHGSGLAEH 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7491609 7494691 - Bda001575.1 Bda13g00653 18784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00653 570 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 1 565 - -
Bda13g00653 570 MobiDBLite consensus disorder prediction 63 79 - -
Bda13g00653 570 Gene3D Transferase(Phosphotransferase) domain 1 358 562 - -
Bda13g00653 570 MobiDBLite consensus disorder prediction 59 106 - -
Bda13g00653 570 SUPERFAMILY Protein kinase-like (PK-like) 254 554 IPR011009 -
Bda13g00653 570 Gene3D Phosphorylase Kinase; domain 1 246 357 - -
Bda13g00653 570 ProSiteProfiles Protein kinase domain profile. 280 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00653 570 MobiDBLite consensus disorder prediction 159 200 - -
Bda13g00653 570 PANTHER OS01G0253100 PROTEIN 1 565 IPR045271 GO:0004714|GO:0006468
Bda13g00653 570 Pfam Protein tyrosine and serine/threonine kinase 283 554 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00653 - - - zju:107416767 725.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00925 Bda-Chr2:49467885 Bda13g00653 Bda-Chr13:7491609 6.03E-126 dispersed
Bda03g01600 Bda-Chr3:55312020 Bda13g00653 Bda-Chr13:7491609 2.50E-82 dispersed
Bda07g01009 Bda-Chr7:11865319 Bda13g00653 Bda-Chr13:7491609 1.15E-170 dispersed
Bda13g00653 Bda-Chr13:7491609 Bda01g00267 Bda-Chr1:27218381 1.45E-72 dispersed
Bda13g00653 Bda-Chr13:7491609 Bda06g00321 Bda-Chr6:5260118 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g488 . Blo15g00549 . Bda13g00653 . . . . Cmo11g01937 Cmo19g01004 . . . . . Cpe15g00790 Cpe04g00762 Bhi05g01832 . . . . . . . . . . . . . . . . Cone12ag1436 . Csa07g00420 . . . . . . Bpe14g00667 . Bma02g01363 Bma12g00749 . . . Cma11g01861 Cma19g00972 Car11g01549 Car19g00763 . . . . . . . . . . . . . . . . Lsi11g01525 . Chy01g00369 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00321 . 24 694 Strubbelig Receptor Gene Family AT4G03390 55.8 5.5e-182 634.8
Bda13g00653 . 21 566 Strubbelig Receptor Gene Family AT4G03390 59.1 4.1e-169 592.0
Bda07g01009 . 17 707 Strubbelig Receptor Gene Family AT4G03390 54.5 2.3e-164 576.2
Bda03g01600 . 3 512 Strubbelig Receptor Gene Family AT5G06820 51.7 1.9e-131 466.8
Bda09g01596 . 407 700 Strubbelig Receptor Gene Family AT1G11130 54.2 5.0e-86 315.8
Bda02g00925 . 353 647 Strubbelig Receptor Gene Family AT1G11130 51.2 1.9e-80 297.4
Bda03g01600 . 3 512 Strubbelig Receptor Gene Family AT5G06820 51.7 1.9e-131 466.8
Bda06g00321 . 24 694 Strubbelig Receptor Gene Family AT4G03390 55.8 5.5e-182 634.8
Bda13g00653 . 21 566 Strubbelig Receptor Gene Family AT4G03390 59.1 4.1e-169 592.0
Bda07g01009 . 17 707 Strubbelig Receptor Gene Family AT4G03390 54.5 2.3e-164 576.2
Bda09g01596 . 50 723 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-144 510.8
Bda09g01596 . 226 730 Strubbelig Receptor Gene Family AT4G22130 69.7 2.1e-175 612.5
Bda02g00925 . 136 677 Strubbelig Receptor Gene Family AT4G22130 59.6 1.6e-162 569.7
Bda13g00653 . 255 560 Strubbelig Receptor Gene Family AT4G22130 58.0 7.2e-99 358.2
Bda07g01009 . 431 707 Strubbelig Receptor Gene Family AT4G22130 59.0 4.0e-89 325.9
Bda06g00321 . 429 686 Strubbelig Receptor Gene Family AT4G22130 59.8 1.8e-86 317.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70007 PF07714 PK_Tyr_Ser-Thr 2.00E-43 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00653 Bda_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.676417 0.0 0.0