Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00660 ATGCAGCCACTCCGTAGCCATGGTGTTTGCTTTGAGCTTTTTGGATTTTGGTTTTGCTTACTGGTTGTGAGTCTTAAATGCTCCGTCGCTTTAGCTCAGCTCCGGCCTGCCGTCGCTGACCTGCATTGGACATATGCGACAGCCACTTGGTATGGCAGCCCCGAAGGCGACGGTAGCGACGGCGGAGCTTGTGGGTATGGAAGTTTGGTGGACGTGAAGCCATTAAAGGCTAGAGTGGGAGCAGTAAGTCCTGTGTTGTTTAAAAATGGCGAAGGCTGTGGCGCCTGCTACAAGGTCAGGTGCGTAGATAGAAGCATGTGTTCGAGAAGAGCCGTTACAGTAATTGTCACCGACGAATGCCCCGGTGGCTACTGCGCCAATGGAAATACCCACTTTGATCTCAGCGGCGCTGCGTTTGGCCGTATGGCTGTGGCTGGGGAAGGTAATCAGCTGAGGAACCGAGGGGAAATTCCAGTCATCTACCGCCGAACTCCATGCACATATCCAGGAAAGAACATTGCCTTTCATGTTAATGAAGGTTCAACTGATTATTGGCTTTCACTCCTGGTTGAGTTCGAGGGTGGAGATGGTGATATTGGATCAATGCATATAAAAGAAGCAGGTTCGAGTGAGTGGGTACCGATGAAACATATATGGGGAGCTACCTGGTGCATAATTAGAGGACCATTAAGAGGGCCATTTTCAGTGAAGCTGACGACGTTATTAACAGGAAGAACTCTGTCTGCTAGAGATGTAATTCCAAGGAACTGGACTCCTAAAGCAACTTATTCCTCTCGCCTTAATTTCTACTAA 813 49.08 MQPLRSHGVCFELFGFWFCLLVVSLKCSVALAQLRPAVADLHWTYATATWYGSPEGDGSDGGACGYGSLVDVKPLKARVGAVSPVLFKNGEGCGACYKVRCVDRSMCSRRAVTVIVTDECPGGYCANGNTHFDLSGAAFGRMAVAGEGNQLRNRGEIPVIYRRTPCTYPGKNIAFHVNEGSTDYWLSLLVEFEGGDGDIGSMHIKEAGSSEWVPMKHIWGATWCIIRGPLRGPFSVKLTTLLTGRTLSARDVIPRNWTPKATYSSRLNFY 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7549017 7550097 - Bda001584.1 Bda13g00660 18791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00660 270 PANTHER EXPANSIN-LIKE PROTEIN B1 11 269 - -
Bda13g00660 270 SUPERFAMILY PHL pollen allergen 171 265 IPR036749 -
Bda13g00660 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 265 IPR007117 -
Bda13g00660 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 171 IPR007112 -
Bda13g00660 270 SUPERFAMILY Barwin-like endoglucanases 39 170 IPR036908 -
Bda13g00660 270 Pfam Expansin C-terminal domain 173 254 IPR007117 -
Bda13g00660 270 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Bda13g00660 270 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Bda13g00660 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Bda13g00660 270 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Bda13g00660 270 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Bda13g00660 270 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Bda13g00660 270 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Bda13g00660 270 PRINTS Major pollen allergen Lol pI signature 241 258 IPR005795 GO:0005576|GO:0019953
Bda13g00660 270 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576|GO:0019953
Bda13g00660 270 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Bda13g00660 270 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Bda13g00660 270 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576|GO:0019953
Bda13g00660 270 PANTHER EXPANSIN-B3 11 269 - -
Bda13g00660 270 Gene3D - 167 266 IPR036749 -
Bda13g00660 270 SMART dpbb_1 79 161 IPR007112 -
Bda13g00660 270 Gene3D - 28 166 IPR036908 -
Bda13g00660 270 Pfam Lytic transglycolase 81 159 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda13g00660 Bda14g00750 CCT
Bda13g00660 Bda15g00905 CCT
Bda06g00313 Bda13g00660 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00425 Bda-Chr11:4511861 Bda13g00660 Bda-Chr13:7549017 3.42E-58 dispersed
Bda13g00660 Bda-Chr13:7549017 Bda15g00905 Bda-Chr15:14858691 6.62E-147 dispersed
Bda14g00639 Bda-Chr14:4786850 Bda13g00660 Bda-Chr13:7549017 1.09E-27 transposed
Bda13g00660 Bda-Chr13:7549017 Bda14g00750 Bda-Chr14:5727761 9.72E-145 wgd
Bda13g00660 Bda-Chr13:7549017 Bda06g00313 Bda-Chr6:5196199 2.05E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00660 K20628 - jre:109020668 447.973