Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00671 ATGAGTAGTGTCTGCGACAACTTCCACCAGTTTCTTCAATCTAAGAAAACCCTTCTGGAAGGCATTGATATTCCACCTAGAAAGCTTCTTAATCGCCATGAAGGTCGCGATTTCTTCTCTGATTCGCCGCCTTTCGCGTTCTCGGGCGATGCTCTCCTGCAGAACCTCTTGCCCTGTAACAACAATGGCGGAGACGATGGAGACGACGACGAAGAAGACGACGATCTGTACTCCTCCGACTTCTTTCGTATGTATGAGTTTAAGGTCCGGCGGTGTACTCGGAGCAGGAGCCACGACTGGACGGACTGCCCGTTCGCTCACCCGGGAGAAAAAGCTCGCCGGAGAGACCCTCGCCGTTTTCACTACTCCGGCAACGTCTGCCCTGAGTTTCGCCGCGGTGCGTGCAACCGTGGGGATAGCTGTGAGTTCGCTCACGGCGTTTTCGAGTGTTGGCTTCATCCGGCGAGGTACCGAACTGAAGCTTGTAAAGATGGGAAAAACTGTAAAAGAAAGGTCTGTTTCTTCGCCCACTCTCCTCGGCAGCTTCGTATTCTGCCGGTAAACTCGCCGGAATTTCAGACGAACAAGAAGAAGCTCCCGATCCCGGTCTCTGGCCAGAAACACTGCTGCTTATTTTGTCATGGTGGTCTATCGTCTTCCCCAACGTCTACTCTCCTAGACATGTCTCGTCTCTCTCCACCCCTTTCGCCGCCAGTATCGCCTGCGAAACATCAGTCGGTGAATGCTGCGACTTTGATTTCAAGAAACGGTGAGGCTAAGATGACCGGAACGCCCCTCCCAGAAATAATCAACTCTCTGGACGCAATGAGCTTCAACGAAGCGAATAAAAGGTCTTCAGTAATACCATCATGGATAGATATTTCCATCTTGAGCGAAGAAAACCAGCAACAGTTTATTCTGTCGCCATCAACTCCGAATTCATCTAGGTCTGTGAGTTGTGTAAGCAGGACTTTAAGTGATGAGAACAAGGTTAAGGGTGAAAATGGCGGATTGGTTTGCTCTGATCCAGATGTCGGGTGGGTCGATGAACTATTGATGTAG 1062 50.56 MSSVCDNFHQFLQSKKTLLEGIDIPPRKLLNRHEGRDFFSDSPPFAFSGDALLQNLLPCNNNGGDDGDDDEEDDDLYSSDFFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGNVCPEFRRGACNRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRQLRILPVNSPEFQTNKKKLPIPVSGQKHCCLFCHGGLSSSPTSTLLDMSRLSPPLSPPVSPAKHQSVNAATLISRNGEAKMTGTPLPEIINSLDAMSFNEANKRSSVIPSWIDISILSEENQQQFILSPSTPNSSRSVSCVSRTLSDENKVKGENGGLVCSDPDVGWVDELLM 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7638333 7639394 + Bda001595.1 Bda13g00671 18802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00671 353 Gene3D - 121 184 - -
Bda13g00671 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 146 IPR000571 GO:0046872
Bda13g00671 353 SMART c3hfinal6 156 179 IPR000571 GO:0046872
Bda13g00671 353 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Bda13g00671 353 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 22 352 - -
Bda13g00671 353 PANTHER UNKEMPT FAMILY MEMBER 22 352 IPR045234 -
Bda13g00671 353 SUPERFAMILY CCCH zinc finger 120 150 IPR036855 GO:0046872
Bda13g00671 353 ProSiteProfiles Zinc finger C3H1-type profile. 122 148 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00398 Bda-Chr2:44523605 Bda13g00671 Bda-Chr13:7638333 5.83E-60 dispersed
Bda13g00671 Bda-Chr13:7638333 Bda11g00674 Bda-Chr11:6761347 1.90E-60 dispersed
Bda13g00671 Bda-Chr13:7638333 Bda06g00297 Bda-Chr6:4961436 1.29E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16907 PF00642 zf-CCCH 4.80E-07 CL0537 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00671 K23047 - jre:108986638 365.155