Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00714 ATGGAGGGATCTGCCTCTTCCCAGAGGAAAATGGGCAGAGGAAAGATCGAGATTAAGCGGATCAAAAACACTACGAATCGACAAGTTACCTTCTGTAAGCGACGCAATGGGCTGCTGAAGAAAGCTTATGAATTATCTGTTTTGTGCGATGCGGAAGTTGCACTCGTTGTCTTCTCCACCCGTGGTCGCCTCTATGAGTATGCCAATAATAGTGTAAGAGGGACTATAGAAAGGTACAAGAAAGCCTGCTCAGACTCTTCCAACACACCCACAGTTGCTGAAACAAGTACTCAGTTTTACCAGCTGGAAGCATCCAAACTAAGAAGACAGATCCGAGATATCCAGGCTTCAAACAGGCATATAACTGGAGAAGCCCTCAGCTCACTGTCGTTTAAGGATTTGAAGAATCTGGAGGGAAGATTGGAGAAAGGAATCAGTCGAATCCGAGCCAAAAAGGTATGA 462 45.45 MEGSASSQRKMGRGKIEIKRIKNTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRGTIERYKKACSDSSNTPTVAETSTQFYQLEASKLRRQIRDIQASNRHITGEALSSLSFKDLKNLEGRLEKGISRIRAKKV 153
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 8487005 8496722 + Bda001647.1 Bda13g00714 18845
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00714 153 SUPERFAMILY SRF-like 12 85 IPR036879 GO:0003677|GO:0046983
Bda13g00714 153 ProSiteProfiles K-box domain profile. 97 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda13g00714 153 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 152 - -
Bda13g00714 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Bda13g00714 153 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 8 152 - -
Bda13g00714 153 CDD MADS_MEF2_like 12 88 IPR033896 GO:0000977|GO:0045944
Bda13g00714 153 Pfam K-box region 94 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda13g00714 153 ProSitePatterns MADS-box domain signature. 13 67 IPR002100 GO:0003677|GO:0046983
Bda13g00714 153 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Bda13g00714 153 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Bda13g00714 153 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Bda13g00714 153 Gene3D - 23 121 IPR036879 GO:0003677|GO:0046983
Bda13g00714 153 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Bda13g00714 153 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00714 Bda-Chr13:8487005 Bda08g00226 Bda-Chr8:2229689 3.15E-46 dispersed
Bda13g00714 Bda-Chr13:8487005 Bda06g00261 Bda-Chr6:4487067 2.32E-97 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16910 PF01486 K-box 4.20E-18 No_clan Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00714 K09264 - ath:AT3G58780 253.832