Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g00714 | ATGGAGGGATCTGCCTCTTCCCAGAGGAAAATGGGCAGAGGAAAGATCGAGATTAAGCGGATCAAAAACACTACGAATCGACAAGTTACCTTCTGTAAGCGACGCAATGGGCTGCTGAAGAAAGCTTATGAATTATCTGTTTTGTGCGATGCGGAAGTTGCACTCGTTGTCTTCTCCACCCGTGGTCGCCTCTATGAGTATGCCAATAATAGTGTAAGAGGGACTATAGAAAGGTACAAGAAAGCCTGCTCAGACTCTTCCAACACACCCACAGTTGCTGAAACAAGTACTCAGTTTTACCAGCTGGAAGCATCCAAACTAAGAAGACAGATCCGAGATATCCAGGCTTCAAACAGGCATATAACTGGAGAAGCCCTCAGCTCACTGTCGTTTAAGGATTTGAAGAATCTGGAGGGAAGATTGGAGAAAGGAATCAGTCGAATCCGAGCCAAAAAGGTATGA | 462 | 45.45 | MEGSASSQRKMGRGKIEIKRIKNTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRGTIERYKKACSDSSNTPTVAETSTQFYQLEASKLRRQIRDIQASNRHITGEALSSLSFKDLKNLEGRLEKGISRIRAKKV | 153 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8487005 | 8496722 | + | Bda001647.1 | Bda13g00714 | 18845 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g00714 | 153 | SUPERFAMILY | SRF-like | 12 | 85 | IPR036879 | GO:0003677|GO:0046983 | |
Bda13g00714 | 153 | ProSiteProfiles | K-box domain profile. | 97 | 153 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda13g00714 | 153 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 8 | 152 | - | - | |
Bda13g00714 | 153 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 20 | 67 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00714 | 153 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN | 8 | 152 | - | - | |
Bda13g00714 | 153 | CDD | MADS_MEF2_like | 12 | 88 | IPR033896 | GO:0000977|GO:0045944 | |
Bda13g00714 | 153 | Pfam | K-box region | 94 | 152 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda13g00714 | 153 | ProSitePatterns | MADS-box domain signature. | 13 | 67 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00714 | 153 | PRINTS | MADS domain signature | 33 | 48 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00714 | 153 | PRINTS | MADS domain signature | 48 | 69 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00714 | 153 | PRINTS | MADS domain signature | 13 | 33 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00714 | 153 | Gene3D | - | 23 | 121 | IPR036879 | GO:0003677|GO:0046983 | |
Bda13g00714 | 153 | ProSiteProfiles | MADS-box domain profile. | 11 | 71 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g00714 | 153 | SMART | madsneu2 | 11 | 70 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda13g00714 | Bda-Chr13:8487005 | Bda08g00226 | Bda-Chr8:2229689 | 3.15E-46 | dispersed | |
Bda13g00714 | Bda-Chr13:8487005 | Bda06g00261 | Bda-Chr6:4487067 | 2.32E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16910 | PF01486 | K-box | 4.20E-18 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g00714 | K09264 | - | ath:AT3G58780 | 253.832 |