Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01244 ATGGACTCTCCTGACACAGACCTTCAATCTCAACTCTTGGAAGCCGGCAACAAGCTTCTACCTCCTCCTTCTTCTCTGCAAGACCTCCTCTCTCTTCTTCAACAAGTTGAGAACTTTTTGTCGAAGGTCGAACAATCCCCTTCCGAAGCAATGCAGAAAGCACTTGCTTTTTCTCAGAAGGCATTGATTTCGGACCCACTTCTAAAACACTCGGACATTGAAGTTAAAGTTTCAGTTGCCTCTTGCATAAGTGAGATAACTAGGATCACGGCCCCTGATGCTCCCTATGATGATGAGAAAATGAAGGCCGTGTTTCACCTTATTGTATCCTCGTTTGAAAATATATCTGATAATTCAAGTCCATCTTTTCCAAAGAGAGTGGCAATCCTTGAAACTGTTGCAAAGGTTAGGTCATGTGTTGTTATGCTGGACCTTGAATGTGATGATTTGATCCTTGAGATGTTCCAGTGCTTCCTTAAGAACATAAGGGATTATCATCAAGATAACGTGTTCTCATCAATGGAGAGAATCATGACGCTGGTTTTAGAAGAAAGTGAAGATATATCTGTTGAACTACTATCTCCCATCTTAGATTGTGTGAAGAAGAACTATGAGGAAGGTTTTCTCATTGCTCGAAAGTTAGGAGAGAAGGTACTCGAAAATTGTTCCACTAAGTTGAAACCTTACATCACTCGTGCTATAAAAATTTTGGGCGTCCATCTAGAAGATTACAGTGACATAGTTGCCTCTATATGCCAAGACGCCTCCAGCTATGTTGAACAGGATGATCTCCCTGCTGCTAGCAAAGACATGGTAAGCTTCATTATGGTTCTGGAGAAACTACGTTTATATTTCGAACATAGTGAGCTCATGTTGGTTGGGCCTTCAGAGTTGGTAGTGAAAAATAGCAGTGCACAGACTATTGCAGACAATATTTTGGATGAGTTGGAAACAAAAAAGAAGGATGATAAGCACAATGGCCAGTCAAGGAATTCTGAACCTGATAATTTTGAATCAAAAAAAGCAACCAAGGCAAATGAAAAACAAGAGCGAAGTACAAAGAAAAGAGGAAGGAAACCTACTTCTTTGCGTAAATCAGAAGAACATGCTGACAGTTCTCTTGTCAATAACAAGGTACCTGAGAATCTTTTAGCTCGCAAAAGTGATGACAAGAAGTGTGCTCCTAAGTCTCCTGGTGAGAATCCGGTTATAGAACTTTTGCCTTCTGAAAATGAAGAAGAGATTGCTGTTAAGTCTTCCTCACCTATTGTTTTGAAGAATGACTCTACTAATGTTGCTTCTCCTTCCAAGGATAGTAGCCTTGTAGAAGAGAAGCCTATCAAAAGGATTGGGCGGCCAAAAAAGGAAAAAATGTCAAGTAAAGAGGCAATACCATTTGCTCATAACAATTCTAAAAATATTTCAGACGCAACAAGTGATTCAGAAGTGAAACTCAACAGACGTTCTGGAAAGAAAACAACTGTTGAGGTTTCAGATGAGAATACAACTAGGGCAGCTGAAAATGCATCACAAAAGGAGACTGATGAAAGGGATGAAAAAGGGAAATCATTAAAGCACTCTTCTGTGAAGGTAGCTGAAAGAAGCAAGGAGGGTGGTGGTTCCTCTTTAAAACAGTCGGATGAGAAGAAAAGGCAGGGTCAGGTAAAAGGTTTTTCTGTGAAGGATGTGCTAGTACCAGTTACCAAAGATGACAAGAAGGTAATGAACTCCTTATGGCTTAAGTCAACTTCAAAAGAGGAACATGACCTGGAGGAGACCCCAAGGAAAAGCTTTAAGAGGAAGCGTGCACTGGGGAAAGAAAAAGAATCAAATTGCAAAGATTTGGGGGAGGACCTGGTTACCTCAAAGTTAAAAGTATGGTGGCCAAAGGATCAAATGTTTTATGAAGGTGTTATTGAATCCTTTGATCCGGACAAAAAGAAGCATAAGGTTGTCTATACAGATGGAGATGAAGAAGTATTGAATCTTTCAAAGGAGAAGTGGGAGTTCATTGAAGAGTTCTCTAAACCTGGACTGGTAAGAAACTCCAAGACATCTTTTAGTTTTAATTCATTTGATGGGTGTTGCAGGCCATTGACTAAGAAAGCAATTGTAAATGCAGACGAATCAGCTAAGCGGGGAAAGATGGATCCTTTGCACAAAAAAGGAGGAACTTCATATGGCAAATTGCAAGGTTCCAGTGGTCGTATTTCTAAATATGGCAGTAAAGTGGAAGGCTTGTCCAAAGATTCGGTGGCCAAGAATGTAGGAAAATCTTTGGATAATAGCTGGGGCAAGTCAAAGGATCATAACTCTGAAAGTGGTAGTGGTAAGGTTGCTGACTCGAGGCGAAAAAGTTCAGGTAAGTTAAAAAAAGATGACGAGGCACCCAAGGCCAGCAAGTCCGATGATGATATTATCTCGAGAGTTCCGACAAAGTCGAAGCGAGATGCACCAAAAACAGGGAAGTTGAAGCAGGAAAACCCAATGTCTTCCTCCGTGTCCACAAGCAAGACCATCAAAAGTGGAGGAAAATACGATATCAATGGCGGAGGCAAGATGAAAGCTTATTCAAGAGCAAAAGAAAGTGGGGATTTGAAGGAGTATTCCAGTGGCAGTGATTCTGAAAAAGTATCAGACAACACAAAAGGGAAGTTAATAAAATCCTCTGATGCCGAGGGAGGGGCGGTGAAGAGCGGGGAGAAGCGAAAAAGAGGGGCCAAAAGTCGGTAA 2733 41.09 MDSPDTDLQSQLLEAGNKLLPPPSSLQDLLSLLQQVENFLSKVEQSPSEAMQKALAFSQKALISDPLLKHSDIEVKVSVASCISEITRITAPDAPYDDEKMKAVFHLIVSSFENISDNSSPSFPKRVAILETVAKVRSCVVMLDLECDDLILEMFQCFLKNIRDYHQDNVFSSMERIMTLVLEESEDISVELLSPILDCVKKNYEEGFLIARKLGEKVLENCSTKLKPYITRAIKILGVHLEDYSDIVASICQDASSYVEQDDLPAASKDMVSFIMVLEKLRLYFEHSELMLVGPSELVVKNSSAQTIADNILDELETKKKDDKHNGQSRNSEPDNFESKKATKANEKQERSTKKRGRKPTSLRKSEEHADSSLVNNKVPENLLARKSDDKKCAPKSPGENPVIELLPSENEEEIAVKSSSPIVLKNDSTNVASPSKDSSLVEEKPIKRIGRPKKEKMSSKEAIPFAHNNSKNISDATSDSEVKLNRRSGKKTTVEVSDENTTRAAENASQKETDERDEKGKSLKHSSVKVAERSKEGGGSSLKQSDEKKRQGQVKGFSVKDVLVPVTKDDKKVMNSLWLKSTSKEEHDLEETPRKSFKRKRALGKEKESNCKDLGEDLVTSKLKVWWPKDQMFYEGVIESFDPDKKKHKVVYTDGDEEVLNLSKEKWEFIEEFSKPGLVRNSKTSFSFNSFDGCCRPLTKKAIVNADESAKRGKMDPLHKKGGTSYGKLQGSSGRISKYGSKVEGLSKDSVAKNVGKSLDNSWGKSKDHNSESGSGKVADSRRKSSGKLKKDDEAPKASKSDDDIISRVPTKSKRDAPKTGKLKQENPMSSSVSTSKTIKSGGKYDINGGGKMKAYSRAKESGDLKEYSSGSDSEKVSDNTKGKLIKSSDAEGGAVKSGEKRKRGAKSR 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34848522 34855234 - Bda000052.1 Bda13g01244 19375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01244 910 MobiDBLite consensus disorder prediction 422 438 - -
Bda13g01244 910 PANTHER TRANSCRIPTIONAL REGULATOR 5 862 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 707 910 - -
Bda13g01244 910 Gene3D - 620 667 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 441 462 - -
Bda13g01244 910 SUPERFAMILY ARM repeat 29 324 IPR016024 -
Bda13g01244 910 MobiDBLite consensus disorder prediction 763 823 - -
Bda13g01244 910 SUPERFAMILY Tudor/PWWP/MBT 619 659 - -
Bda13g01244 910 Pfam Sister chromatid cohesion protein PDS5 protein 28 231 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 540 556 - -
Bda13g01244 910 CDD TUDOR 626 665 IPR002999 -
Bda13g01244 910 MobiDBLite consensus disorder prediction 509 533 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 825 843 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 707 722 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 464 480 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 584 609 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 481 498 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 316 374 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 316 561 - -
Bda13g01244 910 MobiDBLite consensus disorder prediction 858 887 - -
Bda13g01244 910 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 5 862 IPR039776 GO:0007064
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01244 - - - qsu:112005976 731.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00839 Bda-Chr7:9833989 Bda13g01244 Bda-Chr13:34848522 6.02E-15 dispersed
Bda04g00672 Bda-Chr4:55380832 Bda13g01244 Bda-Chr13:34848522 1.26E-11 transposed
Bda04g00795 Bda-Chr4:57849220 Bda13g01244 Bda-Chr13:34848522 4.30E-90 transposed
Bda01g01011 Bda-Chr1:43671193 Bda13g01244 Bda-Chr13:34848522 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g511 . . . . . . . . . . . . . . Sed01g1394 . . Bhi04g00044 Tan02g2759 Cmetu12g0413 . Hepe10g0220 . Lcy13g1828 . . . . . . . . . . . . . . . . Blo18g00010 . Bda13g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002456 2 4 2 1 1 1 2 1 1 1 1 1 2 1 2 2 1 4 2 1 1 2 2 2 2 3 1 3 1 4 54