Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01245 ATGCTCAAGCTCATAGAATCTGGAAGTCCTTCAAACTCATCCATCTCTGAAGCAATTGTTGCTAATTTTCTCGGCTTGAGCGCGTCGGATCCGAACAAGCCACTAATCGGATCCTCCGGCGCAGTTCATTTCTTGGTGAAAACCCTTCAAAACTCGGAAAGTCCAAGTACCTTCCAGGTCAAACAAGATGCTCTGAAAGCTCTCTTCAACCTGTCAATTTTTCCAGGAAATATTCCTTTTTTCTTGGAAGAAACAGCATTTATACCATTTCTCATAGACACGCTGGGAGACATGGAAGTAAGCGAAAGAGCCCTGTCGATTCTCAGCAACGTTGCATCGGTCAGAGAGGGTCGAAAGGCCATTAACAGCGCTCCAGATGCTTTCCCGATTCTCATGGATGTTCTGAGCTGGAACGACTCCCCAGGATGCCAAGAAAAGGCATCGTACATTCTGATGGTGATGGCTCACAAGTCTGTTGCGAACCGACAGACTATGATTGATGCGGGAATGGGATCGGCATTGCTGGAATTGGCGCTTCTGGGTAGTGCGTTGGCTCAGAGAAGAGCCGCAAGAATTCTGGAGTGTTTGAGAGTGGACAAAGGGAAGCAAGTTTCAGAGAGTTTGCAAGGGAATTTGGGGACTTGGGCTGTTTCCGCTCCAATCAGTGGATCTTTGGGCTCAAAGTACTGTTTGGAAGAAGGAGAAGCAGAAGAAAAGGCGAGGATGAGCGAGGAGAAGAAAGCAGTGAAAGAGCTAGTAGAGCAGAGTTTGGAAAGCAACATGAAGAGGATAGCGAAGAGGGCCAATGTAGCTCAAGATTTGGACTTGAAGTCGGTGACGTCAAAAAGCTTGCCGTTCTGA 861 47.5 MLKLIESGSPSNSSISEAIVANFLGLSASDPNKPLIGSSGAVHFLVKTLQNSESPSTFQVKQDALKALFNLSIFPGNIPFFLEETAFIPFLIDTLGDMEVSERALSILSNVASVREGRKAINSAPDAFPILMDVLSWNDSPGCQEKASYILMVMAHKSVANRQTMIDAGMGSALLELALLGSALAQRRAARILECLRVDKGKQVSESLQGNLGTWAVSAPISGSLGSKYCLEEGEAEEKARMSEEKKAVKELVEQSLESNMKRIAKRANVAQDLDLKSVTSKSLPF 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34855875 34856735 - Bda000053.1 Bda13g01245 19376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01245 286 Coils Coil 235 255 - -
Bda13g01245 286 Gene3D - 1 212 IPR011989 -
Bda13g01245 286 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 285 - -
Bda13g01245 286 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 285 - -
Bda13g01245 286 SUPERFAMILY ARM repeat 10 206 IPR016024 -
Bda13g01245 286 SMART arm_5 74 113 IPR000225 GO:0005515
Bda13g01245 286 SMART arm_5 29 73 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01245 - - - pxb:103953744 341.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00768 Bda13g01245 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01245 Bda-Chr13:34855875 Bda07g00590 Bda-Chr7:7230889 3.05E-16 dispersed
Bda09g00799 Bda-Chr9:15390678 Bda13g01245 Bda-Chr13:34855875 9.44E-38 transposed
Bda01g00768 Bda-Chr1:34986157 Bda13g01245 Bda-Chr13:34855875 8.62E-114 wgd
Bda13g01245 Bda-Chr13:34855875 Bda03g00091 Bda-Chr3:877445 2.30E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g514 . . Bda01g00768 . . . . . . . . . . . Sed11g1146 . . Bhi04g00043 Tan02g2758 Cmetu03g1431 . Hepe10g0221 . Lcy13g1826 . . . . . . . . . . . . . . . . . . Bda13g01245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00112
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001538 3 4 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 3 2 1 2 2 3 2 1 71