Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01246 ATGTCGAATTTACCCAAAGGCGATTCGATTCAGATTCGTGAGGTATGGAACGATAACCTGGAGGAGGAATTCTCAATAATTCGCAATGTTGTTGACAATTTTAAGTATATAGCAATGGATACCGAGTTTCCTGGGGTGGTGCTACGCCCGTTGGGAAACTTCAAGAATATTAATGATTACAACTACCAAACTCTGAAAGACAATGTTGATATGTTGAAGTTGATTCAATTAGGTCTCACATTCTCTGACGAGATAGGTAATCTGCCTACTTGTGGGACCGATAAGTTTTGCATCTGGCAATTTAATTTCCGTGAATTCAACATAAGCCAAGATATCTTTGCCAGCGAATCCATTGAGCTCTTGCGTCAGTGCGGGATTGATTTTGTTAAGAACAATGAGAAAGGCATTGACGTAAATCACTTTGGCGAGCTGCTGATGTCTTCTGGGATAGTGTTGAATGATGATGTTTGTTGGGTCACCTTTCACAGTGGGTATGATTTTGGTTATTTGCTTAAGCTGCTGACTTGTCGAAGTTTACCCGAATCCCAGGGAGGTTTCTTCGAGTTGATCAATGTGTACTTTCCAGTGCTTTATGATATCAAGCACTTGATGAAGTTCTGCAATAGTCTTCACGGGGGGTTGAATAAATTGGCAGAATTGCTGGAAGTAGAGAGGGTTGGCGTGTGTCATCAAGCTGGGTCCGATAGCTTGCTCACATCCTCAACATTTAGGAAATTGAGAGATTCATTTTTCAATGGATCTACAGAGAAGTATGCAGGCGTTCTATATGGTCTTGGTGTAGAAAATGGACAGGCTACTAATTAA 825 41.09 MSNLPKGDSIQIREVWNDNLEEEFSIIRNVVDNFKYIAMDTEFPGVVLRPLGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDEIGNLPTCGTDKFCIWQFNFREFNISQDIFASESIELLRQCGIDFVKNNEKGIDVNHFGELLMSSGIVLNDDVCWVTFHSGYDFGYLLKLLTCRSLPESQGGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSSTFRKLRDSFFNGSTEKYAGVLYGLGVENGQATN 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34899322 34900146 + Bda000054.1 Bda13g01246 19377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01246 274 Gene3D - 2 269 IPR036397 GO:0003676
Bda13g01246 274 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED 1 274 - -
Bda13g01246 274 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 274 IPR039637 GO:0004535|GO:0030014
Bda13g01246 274 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
Bda13g01246 274 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01246 K12581 CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8 - rcu:8278619 511.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00493 Bda-Chr5:51728239 Bda13g01246 Bda-Chr13:34899322 5.59E-160 dispersed
Bda09g00267 Bda-Chr9:3318028 Bda13g01246 Bda-Chr13:34899322 1.04E-103 dispersed
Bda12g00571 Bda-Chr12:11749096 Bda13g01246 Bda-Chr13:34899322 8.59E-141 dispersed
Bda12g00729 Bda-Chr12:34688856 Bda13g01246 Bda-Chr13:34899322 1.54E-55 dispersed
Bda12g00731 Bda-Chr12:34785309 Bda13g01246 Bda-Chr13:34899322 7.60E-53 dispersed
Bda01g01009 Bda-Chr1:43662576 Bda13g01246 Bda-Chr13:34899322 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g517 . . . . . . . . . . . . . . . . . Bhi04g00042 Tan02g2757 . . . . Lcy13g1825 . . . . . . . . . . . . . . . . Blo18g00012 . Bda13g01246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000920 6 2 6 7 5 2 2 2 1 1 2 2 3 2 2 4 2 5 4 2 2 3 1 2 1 2 2 5 2 3 85