Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01247 ATGGACAGACCGCAGCAGCGATACCGAGGCGTCAGACAGAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCATCCTTTGCTGAAGATTAGAATTTGGCTAGGCACGTTTGAAACGGCGGAAGACGCGGCGAGAGCCTATGATGAAGCAGCAAGGTTGATGTGCGGACCGAAGGCGCGAACCAACTTCCCTTACGACCCAAATGCTTCTCTCTCACCATCTTCGAAGCTTCTTTCTGCAACCTTAACGGCGAAGCTTCACAGGTGCTACATGGCTTCTCTACAGCTCACGAACCAAATCCCGCAACATCGTCAGAAGCTGCAGCCATTGCAACAAGTCGTTTCGAGCACTGGCAAATCCACGGAAGGGTTGATAGAGAAGAACCCAATTGCGGTAAGGGAGGGAAATCAGAAGGTGGAGAGAGTGAAAGTGGAAAGCTGTCCGGAACAGGCTCTTGAAGAGGATCAAATAGAGCAAATGATAGAGGAGCTTCTGGATTATGGGTCTATGGAGTTGTCCAACCCCAGGGTCTGTGATTCCTAA 543 51.2 MDRPQQRYRGVRQRHWGSWVSEIRHPLLKIRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYDPNASLSPSSKLLSATLTAKLHRCYMASLQLTNQIPQHRQKLQPLQQVVSSTGKSTEGLIEKNPIAVREGNQKVERVKVESCPEQALEEDQIEQMIEELLDYGSMELSNPRVCDS 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34905529 34906178 - Bda000055.1 Bda13g01247 19378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01247 180 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Bda13g01247 180 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Bda13g01247 180 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 175 - -
Bda13g01247 180 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Bda13g01247 180 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Bda13g01247 180 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Bda13g01247 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 175 - -
Bda13g01247 180 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Bda13g01247 180 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Bda13g01247 180 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00804 Bda-Chr4:57888195 Bda13g01247 Bda-Chr13:34905529 6.72E-63 dispersed
Bda12g00577 Bda-Chr12:12270133 Bda13g01247 Bda-Chr13:34905529 9.46E-56 dispersed
Bda13g01247 Bda-Chr13:34905529 Bda01g00877 Bda-Chr1:41669531 4.17E-25 dispersed
Bda12g00663 Bda-Chr12:32052311 Bda13g01247 Bda-Chr13:34905529 9.23E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16922 PF00847 AP2 5.20E-11 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01247 - - vvi:100252609 217.624