Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01251 ATGGGGAAACCGACGGCGAAGAAGAAGGATCAGGTGGGAGAAAATCCTGGATATGCAAATACTAAGCAAGGAAAGCATTCTGATAGAAACTCGAAAGCCTTTGATGAAGATATGACAATTTTTATCAACATGTCCCAAGAGATCAGAGAAGAGGGCAACAAGCTCTTCCAGAAACGTGATCACGAAGGTGCAATGTTAAAATATGAAAAGGCACTCAAACTCCTGCCTAAGAATCACATAGATATTGCTAATCTTCGTAGCAACATGGCTGCCTGTTATATGCAGTTGGGTCTCAGTGAGTACCCTAGAGCAGTCAATGAATGCAATTTAGCATTAGAGGTGTCCCCAAGGTATAGTAAGGCACTAATAAAACGAGCCAGGTGCTATGAGGGTCTGAATCGGTTTGATTTGGCATTTAGAGATGTGAATACTGTTTTGAGTGTCGAGCCGAATAATCTTGCTGCATCAGAGATGTTTGAGAGGGTGAAGAAGAGCCTGACTGAAAAGGGTGTCAAAGTGGACGAGAAGGAAATATATTTAGCCAGTGTAGAGCCACCTCCTGTCACCCGTTTGCATAGAGTGGTGAAAGAGAAGCTAAAGAAGAAGAATAGTAAAAAAAATGAGGAGAAAACAGAGGACAAGGTGGTTGTGGAGGAGAAGGTGAATCTTGTCAAGGATAAAGAAGTTACCAAATTGAATCTTGTCAAGGATAAAGAAGTTACAAAATTGACTGTAGAGCAAGAAAAACTTGTCATGAAGCCTGTCACGAAAGAAAAGGTTATTGCTAAGACTGTGAAGTTGGTGTTTGGGGAGGACATAAGATGGGCACAATTACCAGAGGATTGCAGCATGAAGCTTGTTAGGGATATAGTTTGCGATCGGTTTCCTGGGCTGAAGGGTGTCCTTGTAAAATACAAGGATCAAGAGGGTGATTTGGTTACAATAACTACAGTGGAGGAGCTGAGGCTGGCTGAAGCATCAAGTGATAAGCACGGGTCACTTAAATTGTATATTGCAGAGGTGGGTCCTGATCAAGAACCTGTATATGAGGGATCTGCGGAGGAGGAGCAGCTGAAGAAGGATTCCAAAAAACCAAGTAACTTTGTTGAGAATGGTGATGTGGGGAATAGAGGGGATGCAGTGAAACAATTTACTTCTGTTGAAAGCTGGATAGTGCAGTTTGCACAACTGTTCAAAAACCATGTTGGAATTGAATCTGACTCATACTTAGATCTTCACGAGGTAGGAATGAAGCTTTATTCCGAGGCCATGGATGATACTATTACAAATGATGATGCACAAGAACTTTTTGAAATTGCTGCAGACCAGTTTCAAGAGATGGCCGCTTTGGCATTGTTCAATTGGGGGAATGTGCACATGTCCAGAGCAAGGAAACAAGTGTTCTCTTCAGAAGATATCTCAAGGGAATCTCTGTTTTTGCACATTAAGAATGAATATGAGTGGGCGGAGAAAGAATATAAGAAGGCAGAAACAAGATATGAGGAAGCTCTGAAAATCAAACCCGATTTCTATGAAGGTTTTCTAGCTCTTGGTCAACAGCAGTTTGAGCATGCTAAGCTATGTTGGTACTATGCTATTGCTACCAACACTGATTTAGCAGCTGGAGCTTCCTCAAAGGTTGTAAATCATTATAACAGGGCTGAGGATAGTATAGAAAAGGGCATTCAGATTTGGGAGGAAAGTGAGGAACAACGTTTAAATGGACTGTCGAAAGCTGATAAATATAAATCCCAGTTAGAAAAGATAGATTTTTCTGGTATTTTGAAAGATGTATCAGCTGATGAAGCTTCTGAACAGACTGCAAGCATTAAGTCACAGATATACCTCTTATGGGGTACCTTGCTGTATGAGCGTTCAATTGTGGAATATAAACTCAGTTTACCAACATGGGAAGAATGTTTGGAGGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCATCTCCAACAGACATCGCTGTAATGATAAAAAACCATTGTTCCAATGATACTGCTCTTGATGGTGAATACAAATAA 2034 41.0 MGKPTAKKKDQVGENPGYANTKQGKHSDRNSKAFDEDMTIFINMSQEIREEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDIANLRSNMAACYMQLGLSEYPRAVNECNLALEVSPRYSKALIKRARCYEGLNRFDLAFRDVNTVLSVEPNNLAASEMFERVKKSLTEKGVKVDEKEIYLASVEPPPVTRLHRVVKEKLKKKNSKKNEEKTEDKVVVEEKVNLVKDKEVTKLNLVKDKEVTKLTVEQEKLVMKPVTKEKVIAKTVKLVFGEDIRWAQLPEDCSMKLVRDIVCDRFPGLKGVLVKYKDQEGDLVTITTVEELRLAEASSDKHGSLKLYIAEVGPDQEPVYEGSAEEEQLKKDSKKPSNFVENGDVGNRGDAVKQFTSVESWIVQFAQLFKNHVGIESDSYLDLHEVGMKLYSEAMDDTITNDDAQELFEIAADQFQEMAALALFNWGNVHMSRARKQVFSSEDISRESLFLHIKNEYEWAEKEYKKAETRYEEALKIKPDFYEGFLALGQQQFEHAKLCWYYAIATNTDLAAGASSKVVNHYNRAEDSIEKGIQIWEESEEQRLNGLSKADKYKSQLEKIDFSGILKDVSADEASEQTASIKSQIYLLWGTLLYERSIVEYKLSLPTWEECLEVAVEKFELAGASPTDIAVMIKNHCSNDTALDGEYK 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34939734 34941767 + Bda000058.3 Bda13g01251 19382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01251 677 MobiDBLite consensus disorder prediction 1 30 - -
Bda13g01251 677 Gene3D Tetratricopeptide repeat domain 400 589 IPR011990 GO:0005515
Bda13g01251 677 Gene3D - 264 341 - -
Bda13g01251 677 PANTHER PROTEIN PHOX4 1 674 - -
Bda13g01251 677 SUPERFAMILY TPR-like 433 559 IPR011990 GO:0005515
Bda13g01251 677 SMART PB1_new 262 341 IPR000270 GO:0005515
Bda13g01251 677 SUPERFAMILY CAD & PB1 domains 260 348 - -
Bda13g01251 677 SUPERFAMILY TPR-like 36 163 IPR011990 GO:0005515
Bda13g01251 677 Pfam PB1 domain 264 338 IPR000270 GO:0005515
Bda13g01251 677 ProSiteProfiles PB1 domain profile. 262 341 IPR000270 GO:0005515
Bda13g01251 677 SMART tpr_5 477 510 IPR019734 GO:0005515
Bda13g01251 677 SMART tpr_5 119 152 IPR019734 GO:0005515
Bda13g01251 677 SMART tpr_5 45 78 IPR019734 GO:0005515
Bda13g01251 677 SMART tpr_5 83 118 IPR019734 GO:0005515
Bda13g01251 677 PANTHER PROTEIN CLMP1 1 674 IPR044517 -
Bda13g01251 677 Coils Coil 486 506 - -
Bda13g01251 677 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Bda13g01251 677 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Bda13g01251 677 Gene3D Tetratricopeptide repeat domain 35 180 IPR011990 GO:0005515
Bda13g01251 677 CDD PB1 264 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01251 - - - qsu:111985680 922.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00189 Bda-Chr2:36416175 Bda13g01251 Bda-Chr13:34939734 0 dispersed
Bda09g00915 Bda-Chr9:25823809 Bda13g01251 Bda-Chr13:34939734 1.59E-14 dispersed
Bda13g01251 Bda-Chr13:34939734 Bda09g00529 Bda-Chr9:6969816 3.16E-12 dispersed
Bda13g01251 Bda-Chr13:34939734 Bda07g00307 Bda-Chr7:4168903 1.90E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g554 . . . . . . . . . . Cma01g01489 . . . . . . . . . . . . . Cla05g01710 Cam05g1825 Cec05g1837 Cco05g1895 Clacu05g1810 Cmu05g1696 Cre05g1825 . . . . Lsi04g02102 . . . . . . Bda13g01251 . . . . Sed13g1998 Cmo01g01543 . . . . . . . Bhi09g02959 Tan01g3607 Cmetu07g2079 . Hepe01g1993 . . . . . . . . . . . . Cme07g00090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006619 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 37