Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01262 ATGAAAACTTACAGTTTCCTTTGTTTGGTGACCCTTGGAGAATTGCTTATTCTCCTTCTTTACCACCCTTGCTCCGCCAGCACTCTAAATAAGGGCAATATTTATCCGGGGTTTCAAGGAGCTCAAATGACTTTCATCGATCGCAGCGGCATATTTCTCTATTCCAACAGTTCCGAATTCGCATTTGGGTTCTTCACTACGCAAGATGTGACCAGGTTTACTCTCGCCGTCAACCACCAGAGCAGCTTAAAAATAGTGTGGTCTGCCAACAGGGCCTCCCCGGTTTCGGATTCTGATAAATTTGTGTTCGATGAAAAGGGTAATGTTTTCCTAGAAAGCGCCGGAAACGTTGTTTGGTCCACTGACACCAGCGGTAAAGGAGTTGCTACCATGGCGTTGCAGGACTCGGGAAATTTAGCTTTGATCGGAGACAACGGTGTTGTGATTTGGCAAAGTTTTAGCTATCCAACAGACACCCTTCTGTCAAACCAGGATTTTTCTGAAGGAATGAGGCTTGTAAGCGACCGAGATTCGAACAATTTGACTTATTTTCTTGAAATAAAGTCCGGCGACATAGTGCTATCTGCAGGTTTCCCAACTCCACAGACTTACTGGTCTATGAGGAAGGAGAATCGTAAAACCGTTAACAAAGATGGCGGGTTTGTTTCTTCGGCATCTCTGGATGCAAATTCATGGCGCATATATAGCGAAAATGGCCAAGACAAAGTCTTGCTCTGGCAATTCATCTTCTCCACCGCCACTTCTACAAACACCACTTCTATGGCGGTTTTAGATAATACTGGGTTGCTTACTTTCCATCTTCTTCCCCAAGGAGGGTCTAGTATAGATTCACCCACGACAATACCCGAAGATCAATGCAGCACGCCCTTATTTTGTGGATCTTATTTTGTGTGTTATACGGGACCCAGATGCGATTGTCTCTCTATTCTCCGCTCCTACTCCCAACCAAACTGCCAGACTGGGACTGTTTCTTTCTGTAATTCATCGCAGAGTGATACGCAGCTCGTGAATGCTGGGAGTGGGCTCAGTTACTTTGCTCTCGAATTTCTTCAGCCCTTGAAAACAGATTTGAATGGATGCAAAACCTCTTGTTATTCAAACTGCTCCTGCCTTGCTTTGTTCTTCCAGAGCAGTTCTGGAAGTTGTTTCTTGCTTGACAGAATAGATAGCTTTCAGAGCTCTGACAGTGGGTCTGATTATGTCTCGTTTGTCAAGGTGTTGAGTGAAGGAGCAAGTGGAGAGAAGAATGGAGGGGATAACGGAGCCGGGGGGAATGAAAATGGCCGAAAACCCTTCCCAATTGTTGTTGTGATTATTGCTATTTCTACAGTTGTTGTCATTACTGGTTTACTCTACGTCAGTTACCACTACTACGTGAAGAAGAAAAGGCAGAAATTGCCTGAATCTCCCCATGTAAATTCAGAAGATGATAAATTCTTTGAAGGTTTATCAGGAATGCCGATTCGATTCACCTTCAAAGATCTTCAAGATGCAACCAATAATTTCTGTGTCAAGCTGGGGCAAGGAGGGTTCGGATCAGTTTACAGAGGAGATTTACCAGATGGGTCTCGACTAGCGGTGAAGAAGCTAGAAGGCATTGGACAGGGGAAGAAAGAATTCCGCGCCGAAGTCAGCATCATCGGAAGCATCCATCACCTTCACTTGGTCCGGCTCAAGGGCTTCTGCGCAGAGGGAAACCATCGTCTTCTTGCTTACGAATTCATGGCTAATGGATCCTTAGATAAATGGATATTCAGGAAGAAGAAAGAGGATTTTCTGTTAGATTGGGACACGAGATTTAATATAGCTCTAGGAACAGCAAAAGGACTTGCTTATCTTCACGAAGACTGCGATGCAAAGATAATTCACTGTGATATCAAACCAGAAAACGTTCTTCTAGACGCTAATTATTCGGCCAAAGTTTCTGATTTTGGTCTGGCCAAGCTCATGACGCGAGAGCAGAGCCATGTTTTTACGACAATGAGAGGCACGAGAGGGTACCTTGCCCCGGAATGGATCACAAACTATGCTATATCAGAGAAGAGCGATGTGTATAGCTACGGAATGGTACTTCTGGAGATAATTGGGGGAAGGAAAAGCTACGATCCTTCTGAAATTTCGGAGAGGGCCCATTTTCCTTCTTATGCATTCAAGATGCTGGAAGAAGGAAAATTACGAGACATTCTTGATTCGAACCTCGTCATTAACGAAGCAGACGAGAGGGTTTCGATTGCCATTAAGGTTGCATTGTGGTGCATTCAAGAAGACATGTCTCTTAGGCCCCCCATGACGAAAGTCGTTCAAATGCTGGAAGGAGTCTCAGCAGTTCCGAACCCTCCGACCCTGTCTCCGCTGGGTTCTCGCCTGTACGCCAACTTTTTCAAATCGATAAGCGAGGAGGGAACTTCTTCGGGGCCATCGGACTGCAACAGCGATGCCTATCTGTCCGCAGTGCGCCTTTCTGGGCCAAGATAG 2496 45.43 MKTYSFLCLVTLGELLILLLYHPCSASTLNKGNIYPGFQGAQMTFIDRSGIFLYSNSSEFAFGFFTTQDVTRFTLAVNHQSSLKIVWSANRASPVSDSDKFVFDEKGNVFLESAGNVVWSTDTSGKGVATMALQDSGNLALIGDNGVVIWQSFSYPTDTLLSNQDFSEGMRLVSDRDSNNLTYFLEIKSGDIVLSAGFPTPQTYWSMRKENRKTVNKDGGFVSSASLDANSWRIYSENGQDKVLLWQFIFSTATSTNTTSMAVLDNTGLLTFHLLPQGGSSIDSPTTIPEDQCSTPLFCGSYFVCYTGPRCDCLSILRSYSQPNCQTGTVSFCNSSQSDTQLVNAGSGLSYFALEFLQPLKTDLNGCKTSCYSNCSCLALFFQSSSGSCFLLDRIDSFQSSDSGSDYVSFVKVLSEGASGEKNGGDNGAGGNENGRKPFPIVVVIIAISTVVVITGLLYVSYHYYVKKKRQKLPESPHVNSEDDKFFEGLSGMPIRFTFKDLQDATNNFCVKLGQGGFGSVYRGDLPDGSRLAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCAEGNHRLLAYEFMANGSLDKWIFRKKKEDFLLDWDTRFNIALGTAKGLAYLHEDCDAKIIHCDIKPENVLLDANYSAKVSDFGLAKLMTREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKSYDPSEISERAHFPSYAFKMLEEGKLRDILDSNLVINEADERVSIAIKVALWCIQEDMSLRPPMTKVVQMLEGVSAVPNPPTLSPLGSRLYANFFKSISEEGTSSGPSDCNSDAYLSAVRLSGPR 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35030767 35033262 + Bda000068.1 Bda13g01262 19393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01262 831 Gene3D - 47 155 IPR036426 -
Bda13g01262 831 PIRSF SRK 7 827 IPR024171 GO:0004674
Bda13g01262 831 ProSitePatterns Protein kinases ATP-binding region signature. 513 536 IPR017441 GO:0005524
Bda13g01262 831 Gene3D Phosphorylase Kinase; domain 1 474 581 - -
Bda13g01262 831 CDD STKc_IRAK 513 779 - -
Bda13g01262 831 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 831 - -
Bda13g01262 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 206 IPR036426 -
Bda13g01262 831 SMART serkin_6 507 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g01262 831 ProSiteProfiles Protein kinase domain profile. 507 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g01262 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Bda13g01262 831 CDD B_lectin 44 156 IPR001480 -
Bda13g01262 831 SMART blect_4 44 156 IPR001480 -
Bda13g01262 831 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 831 - -
Bda13g01262 831 SUPERFAMILY Protein kinase-like (PK-like) 490 778 IPR011009 -
Bda13g01262 831 Pfam D-mannose binding lectin 85 166 IPR001480 -
Bda13g01262 831 ProSiteProfiles Bulb-type lectin domain profile. 38 154 IPR001480 -
Bda13g01262 831 Gene3D Transferase(Phosphotransferase) domain 1 582 785 - -
Bda13g01262 831 Pfam Protein kinase domain 511 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01262 - - - jre:108985155 1127.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00747 Bda13g01262 CCT
Bda01g00747 Bda13g01262 ECH
Bda01g01002 Bda13g01262 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00578 Bda-Chr1:32802761 Bda13g01262 Bda-Chr13:35030767 9.60E-15 dispersed
Bda11g01370 Bda-Chr11:16559303 Bda13g01262 Bda-Chr13:35030767 1.31E-98 dispersed
Bda03g00527 Bda-Chr3:4406677 Bda13g01262 Bda-Chr13:35030767 4.83E-161 transposed
Bda05g00534 Bda-Chr5:53007105 Bda13g01262 Bda-Chr13:35030767 0 transposed
Bda05g00552 Bda-Chr5:53348924 Bda13g01262 Bda-Chr13:35030767 0 transposed
Bda10g00745 Bda-Chr10:41805124 Bda13g01262 Bda-Chr13:35030767 1.93E-91 transposed
Bda14g00761 Bda-Chr14:5818087 Bda13g01262 Bda-Chr13:35030767 7.53E-101 transposed
Bda15g00939 Bda-Chr15:17293773 Bda13g01262 Bda-Chr13:35030767 2.10E-122 transposed
Bda01g01002 Bda-Chr1:43605480 Bda13g01262 Bda-Chr13:35030767 0 wgd
Bda01g00747 Bda-Chr1:34715296 Bda13g01262 Bda-Chr13:35030767 2.05E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70012 PF00069 Pkinase 3.40E-48 CL0016 Bda PK