Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01263 AGAACCGGAACGAGTGCTGATTTGCGAATCAGGGAAGAGGTTAGGAAGGTCGTGTCCCAGGGTAAGGCTGCTGGTATTCTGCGTCTGGTATTTCACGACGCAGGAACTTTTGATATGGACGAAAATTCAGGTGGCATGAATGGTTCTATTGTTTATGAGCTTGATAGACCTGAAAATACTGGTCTCAAAAAATCTTTGAAGGTGAGCTCTCTCTCTCTCTCTCTCTTTCCCTGGTTTGGGATGTTTTTGAATTGTTCTTTGGCAGCTTCATGGGCAGATATGATTGCTGTCGCCGGTGCAGAAGCGGTTTCAATTTGTGGAGGTCCAAATATCCCTGTTGGCTTAGGGAGATTAGATTCATTGAAGGATGATCCTGAAGGGAGACTTCCTCAAGAGTCTCTGGATGCTTTGGGTTTGAAGCAATGTTTTCTTAAGAAAGGATTTTCAACTCGGGAACTTGTTGCTCTATCTGGAGCCCATACTCTTGGGAGCAAGGGATTTGGAAATCCAACAGTTTTTGATAATTCATACTTTCGGATTCTTCTGGAGAAGCCGTGGAAGTCTTCAGCTGGTGGGATGACGAGCATGATCGGACTTCCTTCTGACCGTGCTCTTGCGGAGGACGAAGAATGCATGAGATGGATCAAAAACTATGCACAGAATCAGAAGACGTTCTTTGAAGATTTCAAGAATGCTTATACCAAGTTAGTGAATTCTGGTGCTGTGTGGAAAAGGCTGTGA 741 44.53 RTGTSADLRIREEVRKVVSQGKAAGILRLVFHDAGTFDMDENSGGMNGSIVYELDRPENTGLKKSLKVSSLSLSLFPWFGMFLNCSLAASWADMIAVAGAEAVSICGGPNIPVGLGRLDSLKDDPEGRLPQESLDALGLKQCFLKKGFSTRELVALSGAHTLGSKGFGNPTVFDNSYFRILLEKPWKSSAGGMTSMIGLPSDRALAEDEECMRWIKNYAQNQKTFFEDFKNAYTKLVNSGAVWKRL 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35034406 35035829 + Bda000069.1 Bda13g01263 19394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01263 246 Pfam Peroxidase 11 221 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bda13g01263 246 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 9 244 - -
Bda13g01263 246 ProSitePatterns Peroxidases active site signature. 23 34 IPR019794 GO:0004601
Bda13g01263 246 PRINTS Plant ascorbate peroxidase signature 217 241 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bda13g01263 246 PRINTS Plant ascorbate peroxidase signature 146 167 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bda13g01263 246 PRINTS Plant ascorbate peroxidase signature 23 38 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bda13g01263 246 PRINTS Plant ascorbate peroxidase signature 41 51 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bda13g01263 246 Gene3D - 11 240 - -
Bda13g01263 246 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bda13g01263 246 PRINTS Haem peroxidase superfamily signature 152 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bda13g01263 246 PRINTS Haem peroxidase superfamily signature 23 37 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bda13g01263 246 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bda13g01263 246 ProSitePatterns Peroxidases proximal heme-ligand signature. 152 162 IPR019793 -
Bda13g01263 246 Gene3D Peroxidase, domain 2 130 233 - -
Bda13g01263 246 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 9 244 IPR044831 GO:0004601|GO:0034599
Bda13g01263 246 ProSiteProfiles Plant heme peroxidase family profile. 23 236 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bda13g01263 246 SUPERFAMILY Heme-dependent peroxidases 10 240 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01263 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - vvi:100247405 351.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01263 Bda-Chr13:35034406 Bda14g00613 Bda-Chr14:4606072 4.43E-36 dispersed
Bda13g01263 Bda-Chr13:35034406 Bda01g01440 Bda-Chr1:50309099 6.51E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37