Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda13g01265 | ATGGGAGAGACCAGGGACGCCGAGTACGAGGACGAGCTTGTCGACTACGAAGATGAGGAATACAAGGCATCCGACGCTGTTGGAGCCAAAGTTAATGGCGAAGCGGCAAAGAAGGGTTATGTCGGCATTCATAGTTCCGGGTTCAGAGACTTTCTTTTGAAGCCAGAGCTTCTTCGTGCTATTGTGGACTCGGGATTTGAGCATCCTTCGGAAGGCAAACTTTCTATTGTTTTGCAGCTATTTGCACTTGTTCGAATATATGGTCTTCTTGGAGTTTTGGTGCAACATGAATGTATTCCCCAAGCTATTCTAGGAATGGATGTGCTTTGTCAAGCTAAATCTGGTATGGGAAAAACTGCTGTTTTTGTATTATCCGTCTTGCAGCAAATTGACCCTGTGGCCGGTCAAGTTTCTGCCCTTGTTCTTTGTCATACAAGAGAACTAGCATACCAGATTTGCCATGAGTTCGAGAGGTTCAGTTCTTACTTGTCGGATCTCAAAGTGTCGGTATTCTATGGCGGTGTCAATATTCGAATTCACAAAGATCTACTGAAGAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATATTGGCTTTGGCGAGAGAAAAGGATCTTTCTCTTAAGAATGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTCGAATCACTTGACATGAGGAGGGACGTGCAGGAGATTTTCAAGATGACCCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTAAGCAAAGAAATTCGCCCGGTCTGCCATAAATTTATGCAAGATCCAATGGAAATATATGTGGATGACGAGGCAAAGTTGACCCTGCATGGTCTTGTGCAGCACTACATCAAATTGGCTGAAGCTGAGAAAAATCGCAAGTTGAATGACCTTCTCGATGCTCTGGACTTCAATCAAGTGGTCATATTCGTCAAAAGTGTGAGCAGAGCAGCTCAGTTGGACAAGTTATTAGTCGAATGTAATTTTCCCTCTATATGCATTCACTCTGGCATGTCTCAGGAGGAAAGGTTGACGCGTTACAAAGGATTCAAGGAGGGACATAAGAGGATTCTTGTTGCTACAGATTTGGTTGGCCGGGGTATTGACATTGAACGTGTGAACATAGTTATTAACTATGATATGCCTGATTCTGCTGATACTTATCTACACAGGGTTGGTAGAGCTGGTAGGTTTGGTACTAAGGGGCTTGCCATTACTTTTGTTTCATCTGCTGCAGACACTGACGTTCTCAATAATGTTCAAGAAAGGTTTGCTGTGAACATAATGGAACTTCCTGAGCAGATTGATACCTCTACTTACAGTACGTGCTTATATTTATCTTTAGCTATTGTACTGGTAGAACTTTAG | 1386 | 42.71 | MGETRDAEYEDELVDYEDEEYKASDAVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLSIVLQLFALVRIYGLLGVLVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSVLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSSYLSDLKVSVFYGGVNIRIHKDLLKNECPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCHKFMQDPMEIYVDDEAKLTLHGLVQHYIKLAEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAQLDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADTDVLNNVQERFAVNIMELPEQIDTSTYSTCLYLSLAIVLVEL | 461 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 35043466 | 35046924 | + | Bda032808 | Bda13g01265 | 19396 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda13g01265 | 461 | SMART | helicmild6 | 324 | 405 | IPR001650 | - | |
| Bda13g01265 | 461 | Pfam | Helicase conserved C-terminal domain | 298 | 405 | IPR001650 | - | |
| Bda13g01265 | 461 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 137 | 416 | IPR027417 | - | |
| Bda13g01265 | 461 | CDD | SF2_C_DEAD | 285 | 414 | - | - | |
| Bda13g01265 | 461 | Gene3D | - | 281 | 449 | IPR027417 | - | |
| Bda13g01265 | 461 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 | 27 | 444 | - | - | |
| Bda13g01265 | 461 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 300 | 445 | IPR001650 | - | |
| Bda13g01265 | 461 | SMART | ultradead3 | 86 | 288 | IPR014001 | - | |
| Bda13g01265 | 461 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 99 | 272 | IPR014001 | - | |
| Bda13g01265 | 461 | Pfam | DEAD/DEAH box helicase | 94 | 258 | IPR011545 | GO:0003676|GO:0005524 | |
| Bda13g01265 | 461 | Gene3D | - | 42 | 280 | IPR027417 | - | |
| Bda13g01265 | 461 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 27 | 444 | - | - | |
| Bda13g01265 | 461 | CDD | DEADc_DDX39 | 45 | 274 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda03g00068 | Bda13g01265 | CCT | |
| Bda01g00741 | Bda13g01265 | CCT | |
| Bda03g00068 | Bda13g01265 | ECH | |
| Bda01g00741 | Bda13g01265 | ECH | |
| Bda01g00999 | Bda13g01265 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda13g00354 | Bda-Chr13:4397992 | Bda13g01265 | Bda-Chr13:35043466 | 1.46E-73 | dispersed | |
| Bda13g01265 | Bda-Chr13:35043466 | Bda13g00716 | Bda-Chr13:8551295 | 2.84E-56 | dispersed | |
| Bda12g00904 | Bda-Chr12:39770394 | Bda13g01265 | Bda-Chr13:35043466 | 1.20E-12 | transposed | |
| Bda01g00999 | Bda-Chr1:43582058 | Bda13g01265 | Bda-Chr13:35043466 | 0 | wgd | |
| Bda01g00741 | Bda-Chr1:34683729 | Bda13g01265 | Bda-Chr13:35043466 | 0 | wgd | |
| Bda13g01265 | Bda-Chr13:35043466 | Bda03g00068 | Bda-Chr3:735133 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda13g01265 | K12812 | - | csv:101217346 | 778.859 |