Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01265 ATGGGAGAGACCAGGGACGCCGAGTACGAGGACGAGCTTGTCGACTACGAAGATGAGGAATACAAGGCATCCGACGCTGTTGGAGCCAAAGTTAATGGCGAAGCGGCAAAGAAGGGTTATGTCGGCATTCATAGTTCCGGGTTCAGAGACTTTCTTTTGAAGCCAGAGCTTCTTCGTGCTATTGTGGACTCGGGATTTGAGCATCCTTCGGAAGGCAAACTTTCTATTGTTTTGCAGCTATTTGCACTTGTTCGAATATATGGTCTTCTTGGAGTTTTGGTGCAACATGAATGTATTCCCCAAGCTATTCTAGGAATGGATGTGCTTTGTCAAGCTAAATCTGGTATGGGAAAAACTGCTGTTTTTGTATTATCCGTCTTGCAGCAAATTGACCCTGTGGCCGGTCAAGTTTCTGCCCTTGTTCTTTGTCATACAAGAGAACTAGCATACCAGATTTGCCATGAGTTCGAGAGGTTCAGTTCTTACTTGTCGGATCTCAAAGTGTCGGTATTCTATGGCGGTGTCAATATTCGAATTCACAAAGATCTACTGAAGAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATATTGGCTTTGGCGAGAGAAAAGGATCTTTCTCTTAAGAATGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTCGAATCACTTGACATGAGGAGGGACGTGCAGGAGATTTTCAAGATGACCCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTAAGCAAAGAAATTCGCCCGGTCTGCCATAAATTTATGCAAGATCCAATGGAAATATATGTGGATGACGAGGCAAAGTTGACCCTGCATGGTCTTGTGCAGCACTACATCAAATTGGCTGAAGCTGAGAAAAATCGCAAGTTGAATGACCTTCTCGATGCTCTGGACTTCAATCAAGTGGTCATATTCGTCAAAAGTGTGAGCAGAGCAGCTCAGTTGGACAAGTTATTAGTCGAATGTAATTTTCCCTCTATATGCATTCACTCTGGCATGTCTCAGGAGGAAAGGTTGACGCGTTACAAAGGATTCAAGGAGGGACATAAGAGGATTCTTGTTGCTACAGATTTGGTTGGCCGGGGTATTGACATTGAACGTGTGAACATAGTTATTAACTATGATATGCCTGATTCTGCTGATACTTATCTACACAGGGTTGGTAGAGCTGGTAGGTTTGGTACTAAGGGGCTTGCCATTACTTTTGTTTCATCTGCTGCAGACACTGACGTTCTCAATAATGTTCAAGAAAGGTTTGCTGTGAACATAATGGAACTTCCTGAGCAGATTGATACCTCTACTTACAGTACGTGCTTATATTTATCTTTAGCTATTGTACTGGTAGAACTTTAG 1386 42.71 MGETRDAEYEDELVDYEDEEYKASDAVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLSIVLQLFALVRIYGLLGVLVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSVLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSSYLSDLKVSVFYGGVNIRIHKDLLKNECPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCHKFMQDPMEIYVDDEAKLTLHGLVQHYIKLAEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAQLDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADTDVLNNVQERFAVNIMELPEQIDTSTYSTCLYLSLAIVLVEL 461
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 35043466 35046924 + Bda032808 Bda13g01265 19396
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01265 461 SMART helicmild6 324 405 IPR001650 -
Bda13g01265 461 Pfam Helicase conserved C-terminal domain 298 405 IPR001650 -
Bda13g01265 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 416 IPR027417 -
Bda13g01265 461 CDD SF2_C_DEAD 285 414 - -
Bda13g01265 461 Gene3D - 281 449 IPR027417 -
Bda13g01265 461 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 27 444 - -
Bda13g01265 461 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 300 445 IPR001650 -
Bda13g01265 461 SMART ultradead3 86 288 IPR014001 -
Bda13g01265 461 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 272 IPR014001 -
Bda13g01265 461 Pfam DEAD/DEAH box helicase 94 258 IPR011545 GO:0003676|GO:0005524
Bda13g01265 461 Gene3D - 42 280 IPR027417 -
Bda13g01265 461 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 444 - -
Bda13g01265 461 CDD DEADc_DDX39 45 274 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00354 Bda-Chr13:4397992 Bda13g01265 Bda-Chr13:35043466 1.46E-73 dispersed
Bda13g01265 Bda-Chr13:35043466 Bda13g00716 Bda-Chr13:8551295 2.84E-56 dispersed
Bda12g00904 Bda-Chr12:39770394 Bda13g01265 Bda-Chr13:35043466 1.20E-12 transposed
Bda01g00999 Bda-Chr1:43582058 Bda13g01265 Bda-Chr13:35043466 0 wgd
Bda01g00741 Bda-Chr1:34683729 Bda13g01265 Bda-Chr13:35043466 0 wgd
Bda13g01265 Bda-Chr13:35043466 Bda03g00068 Bda-Chr3:735133 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01265 K12812 - csv:101217346 778.859