Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01266 ATGCTTCGGCGTGAAATTTTGCCTAACAAATTTACTTACCCATTTGTTCTCAAGGCCTGTGCTGGTCTAAAGCTACTTGATATGGGTCAATCAGTTCATGGGTCGGCTGTAAAACTTGGGTTCGATAGCGATGTTCATGTTCAGAATACTTTGATTCACATGTACTGCTGTGGCGAAGAAGGAATAAAGTTTGCACGGAAGCTGTTCGATGAAATGCCTAAATCGGACTCTGTATCGTGGAGTGCAATGATAGGAGGCTATGCTCGTCTGGGATTTTCAACCGAGGCAGTTTCATTGTTTAGAGAGATGCAAGTGATGGAGGTTCCACCAGACGAGATCACCATGATCTCCGTTCTTTCCGCTTGCACGGATTTAGGTGCACTTGAACTAGGGAAATGGCTCGAGCATTATATCGAGAAAGAAAGAATTCAAAAACCTATAGAACTTTGTAATGCACTGATCGACATGTTTGCAAAATGTGGAGATGTAAATAAAGCTTTGATCTTGTTCAGAAATATGAGCAGGAAGACAATAGTTTCTTGGACATCTGTCCTTGTGGGTATGGCCATGCATGGTCGAGGTCTGGAAGCAATATCTTTATTTGAAGAGATGATCAAAGATGGAGTTGCTCCAGACGATGTTGCCTTTATTGGGTTGCTTTCTGCTTGTAGTCATTCCGGGTTAGTGAAAAGAGGCCAAGGCTATTTTCATTCAATGAAGAACAGCTACAGAGTTGTGCCTAAGATAGAACACTATGGATGCATGGTCGACATATTATGCAGGGCCGGACACATCAAGGAAGCCGTAGATTTCATTAATAAAATGCCAATCGAACCAAACTCGATAATTTTACGAACCCTCGTGAGTGCTTGTCGCGCTCATGGCCAGCTTGCGCTGGGGGAGAAAATCACCAAGCAATTAATCAGATACGAGCCAATGCGGGAGTCAAACTACATATTGCTTTCGAATATCTACGCAAAACTGACTCAATGGGAGGCAAAAACGAAGATTAGAGAGGCAATGGACATGAAAGGGATGAAGAAAATACCAGGGAGCACAATGGTGGAGCTGGATGGCGAGATCTACGAGTTCGTGGCCGGAGATAAATCGCAGAAACAGCAGAAGGAAATATATGAGATGTTGGATGAGATGGGGAGGGAGATGAAGAGGGCTGGTTATCTTCCAACTACATCTGAGGTATTGCTGGACATTAATGAGGAGGATAAGGAGGACGCTTTGAATAGACACAGTGAAAAACTCGCCCTTGCTTTTATGCTTCTCAACACTCCGGCGGGAAGTCCAATTCGGATAGTGAAGAATTTGAGAATATGCGGGGACTGCCACTCGGCTACCAAGTTCATCTCTATGATTTACTCTCGAGAAATAGTAGTCAGGGATCGAAACAGGTTTCACCATTTCGAGAATGGGTTCTGCTCCTGCAGAGATTTCTGGTGA 1455 43.99 MLRREILPNKFTYPFVLKACAGLKLLDMGQSVHGSAVKLGFDSDVHVQNTLIHMYCCGEEGIKFARKLFDEMPKSDSVSWSAMIGGYARLGFSTEAVSLFREMQVMEVPPDEITMISVLSACTDLGALELGKWLEHYIEKERIQKPIELCNALIDMFAKCGDVNKALILFRNMSRKTIVSWTSVLVGMAMHGRGLEAISLFEEMIKDGVAPDDVAFIGLLSACSHSGLVKRGQGYFHSMKNSYRVVPKIEHYGCMVDILCRAGHIKEAVDFINKMPIEPNSIILRTLVSACRAHGQLALGEKITKQLIRYEPMRESNYILLSNIYAKLTQWEAKTKIREAMDMKGMKKIPGSTMVELDGEIYEFVAGDKSQKQQKEIYEMLDEMGREMKRAGYLPTTSEVLLDINEEDKEDALNRHSEKLALAFMLLNTPAGSPIRIVKNLRICGDCHSATKFISMIYSREIVVRDRNRFHHFENGFCSCRDFW 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35047379 35048833 - Bda000071.5 Bda13g01266 19397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01266 484 Gene3D Tetratricopeptide repeat domain 147 360 IPR011990 GO:0005515
Bda13g01266 484 Gene3D Tetratricopeptide repeat domain 1 146 IPR011990 GO:0005515
Bda13g01266 484 Pfam E motif 294 356 IPR046848 -
Bda13g01266 484 Pfam PPR repeat family 177 224 IPR002885 -
Bda13g01266 484 Pfam PPR repeat family 76 122 IPR002885 -
Bda13g01266 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 176 IPR002885 -
Bda13g01266 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Bda13g01266 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Bda13g01266 484 Pfam DYW family of nucleic acid deaminases 392 484 IPR032867 GO:0008270
Bda13g01266 484 PANTHER - 1 470 - -
Bda13g01266 484 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 470 - -
Bda13g01266 484 Pfam PPR repeat 150 176 IPR002885 -
Bda13g01266 484 Pfam PPR repeat 251 275 IPR002885 -
Bda13g01266 484 TIGRFAM PPR: pentatricopeptide repeat domain 149 176 IPR002885 -
Bda13g01266 484 TIGRFAM PPR: pentatricopeptide repeat domain 78 112 IPR002885 -
Bda13g01266 484 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Bda13g01266 484 TIGRFAM PPR: pentatricopeptide repeat domain 252 275 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01266 - - - pper:18792090 788.875
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00917 Bda-Chr7:10766643 Bda13g01266 Bda-Chr13:35047379 1.12E-170 dispersed
Bda13g01266 Bda-Chr13:35047379 Bda05g00676 Bda-Chr5:55067841 4.06E-19 dispersed
Bda13g01266 Bda-Chr13:35047379 Bda03g01661 Bda-Chr3:55899609 4.65E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g465 . . . . . . . . . Cmo12g00282 . . . Car12g00314 . . . Bhi04g00972 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01266 Bpe14g00577 . . . . . . . Cma12g00333 . . . . . . . . . . . . . . . . . . Lsi08g01196 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187