Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01277 CTTAATGTTCATGTATGGCCACAAAACAGGTTAGATGTCTATATTCATGATTATCTAGTGAAGAGAGATTTAAAAGCCACTGCTCAGGCGTTTCAAGCAGAAGGGAAAGTATCTTCAGATCCTGTTGCCATTGATGCGCCTGGAGGATTTCTCTTTGAATGGTGGTCAGTTTTCTGGGATATATTCATTGCTAGAACTAATGAGAAGCACTCTGAGGTTGCTGCATCATATATCGAGACTCAGTTAATTAAAGCAAGGGAGCAACAACAACAACAACAGCAACAACAACACCCGCAGCTCCAACAACCTCAACAATCACAACATCAGCAGCAGCAACAACACATGCAAATGCAGCAGCACCTGTTGCAGAGACAGCAACAACAGCAACAGCAACAGCAGCAACAGCAACAGCAGCAACAACAGCAACAACAACAACAAACACAGGCCCAACAACAGCAACGAAGAGATGGGCCTCACCTGTTAAATGGAAATTCTAATGGGCTTGTTGGAAATGATCCTCTTTTGCGACAAACCCCTGGAACTGCAAATGCTTTGGCTGCAAAGATGTATGAAGAAAGACTAAAATTGCCTCCTCAGAGAGATGCCCTGGATGATGCGACTATAAAGCAACGATACGGTGAGAATGTGGGGCAGCTGTCAGATCCAAATCACGCTTCCGTGCTCAAGGCAACTGCGGCAAGTGGGCAGGCATCAGGTCAAGTGTTACATGGGGCTGCTGGGACAATGTCTCCTCAGGTTCAAGCTAGGGGTCAGCAATTGCCAGGTTCCACTCCGGACATAAAAAGTGAGATCAATCCAGTGCTGAATCCAAGAGCAGCGGGTCCGGAGGGATCACTAATGGGTATTCCTGGATCTAACCATGGGGGCAATAATTTGACTTTGAAAGGATGGCCTCTTACGGGATTGGATCAGCTTCGTTCTGGGCTTCTTCAGCAACAAAAATCTTTTATACAATCTCCTCAGCCATTTCACCAGATCCAGATGTTGGCTCCACAACAGCAACAGTTCATGCTTGCACAGCAAAATTTAACTTCCCCATCTGCAAGTGACGAAAACAGAAGATTGAGAATGCTAGTGAACAGTAGGAATATGGGACTTGCAAAGGACGGGCTGTCAAATTCTGTTGGTGATGTTGTTGCCAATGTTGGCTCTCCGCTCCAACCTGGTGGCCCTCTTTTGCCTCGTGGAGAAACTGATGTTCTCTATAAGTTAAAAATGGCTCAAATACAACAGCAGCAGCAACAGCAGAGCAATAACCCTCAGCAGCAGCAACTTCAACAACAGCATGTTCTTTCTGGTCAGCAATCGCAAAGTTCAAGTTTCAATATCCATCAGCAAGATAGTAAAATGGGTGGTGCTGGCAGTGTAAACATGGATGGAAACATGTCAAACTCCTTTCGAGGAACTGATCAGGTTTCAAAAAACCAGACTGTGAGAAAAAGAAAGCAGCCAGTGTCATCTTCAGGTCCTGCCAATAGCTCAGGAACAGCGAACACTGCTGGCCCTTCCCCAAGTTCGGCACCGTCAACGCCTTCAACACATACCCCTGGAGATGTGATCTCCATGCCATTGCCTCACAGTGGTGGTTCTTCCAAGCCGTTGATGTTGGGAGCTGACGGTTCCGGCACTTTTACATCACCATCGAATCAATTGTGGGATGATAAAGATCTTGAATTGCAGGCTGACATGGATCGGTTTGTAGAAGATGGATCTCTTGATGATAATGTCGAGTCTTTTTTATCTCACGACGATTCAGATCCTAGAGATCCAGTCGGTCGGGATGTGAACAAAGGTTTTTCATTTATTGAAATTAATTCAGTAAGAGCCAGCTCTAGTAAAGTTTCATGTTGCCACTTTTCGTCTGATGGAAAATTGCTTGCTAGTGGTGGTCATGACAAAAAGGCAGTATTGTGGCACACAGAAAATTTTAAGCCAAAGACCTCGCTCGAAGAACATTCATCCATTATAACAGATGTTCGTTTCAGTCCGAGCATGCCTCGTCTTGCTACTTCTTCATTCGATAGAACTGTCAGGGTTTGGGATGCTGACAATCCTTGTTACTCTCTTAGGACTTTTACTGGACATTCAGCCGCAGTTATGTCTTTAGACTTCCATCCAAACAAAGATGATCTTATTTGCTCTTGTGATGGAGATGGCGAGATACGTTACTGGAGCATCAACAATGGAAGCTGTGCAAAAGTTTGCAAGGGTGGCACTGGGCAGATGAGATTTCAGCCCCGTCTTGGTCGGTTTCTTGCTTCTGCTGTTGATAAAATTGTATCTATTCTAGACGTGGAGGCACAAGTCAGTCGCCATTCTTTGCAGGGACATTCGAATACAGTCCATTCAGTCTCGTGGGATCCTTCAGGCGAGTTTCTTGCCTCAGTTAGCGAGGATTCAGTCAGGGTTTGGTCATTTGGCTCGGGATCCGAAGGAGAGTGCATTCATGAGTTAAACTGTAACGGCAATAAATTCCAATCCTGTGTTTTCCACCCTACATATCCTTCACTACTTTCCTTGGAGCTATGGAACATGTCCGAGAGTAAAACGATGACTCTTTCTGCTCACGACGGATTGATTTCTTCGCTGGCTGTGTCAACCGTGGGTGGTTTTGTTGCTTCCGCCAGCCACGACAAGTTTGTCAAGCTATGGAAGTAG 2679 45.5 LNVHVWPQNRLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQHPQLQQPQQSQHQQQQQHMQMQQHLLQRQQQQQQQQQQQQQQQQQQQQQQTQAQQQQRRDGPHLLNGNSNGLVGNDPLLRQTPGTANALAAKMYEERLKLPPQRDALDDATIKQRYGENVGQLSDPNHASVLKATAASGQASGQVLHGAAGTMSPQVQARGQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGLLQQQKSFIQSPQPFHQIQMLAPQQQQFMLAQQNLTSPSASDENRRLRMLVNSRNMGLAKDGLSNSVGDVVANVGSPLQPGGPLLPRGETDVLYKLKMAQIQQQQQQQSNNPQQQQLQQQHVLSGQQSQSSSFNIHQQDSKMGGAGSVNMDGNMSNSFRGTDQVSKNQTVRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPLPHSGGSSKPLMLGADGSGTFTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESFLSHDDSDPRDPVGRDVNKGFSFIEINSVRASSSKVSCCHFSSDGKLLASGGHDKKAVLWHTENFKPKTSLEEHSSIITDVRFSPSMPRLATSSFDRTVRVWDADNPCYSLRTFTGHSAAVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCAKVCKGGTGQMRFQPRLGRFLASAVDKIVSILDVEAQVSRHSLQGHSNTVHSVSWDPSGEFLASVSEDSVRVWSFGSGSEGECIHELNCNGNKFQSCVFHPTYPSLLSLELWNMSESKTMTLSAHDGLISSLAVSTVGGFVASASHDKFVKLWK 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35120063 35125833 + Bda000082.1 Bda13g01277 19408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01277 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 655 IPR001680 GO:0005515
Bda13g01277 892 Pfam LisH 10 35 IPR006594 GO:0005515
Bda13g01277 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 656 691 IPR001680 GO:0005515
Bda13g01277 892 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 9 892 - -
Bda13g01277 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 781 821 IPR001680 GO:0005515
Bda13g01277 892 MobiDBLite consensus disorder prediction 89 119 - -
Bda13g01277 892 SMART WD40_4 774 812 IPR001680 GO:0005515
Bda13g01277 892 SMART WD40_4 853 892 IPR001680 GO:0005515
Bda13g01277 892 SMART WD40_4 735 771 IPR001680 GO:0005515
Bda13g01277 892 SMART WD40_4 607 646 IPR001680 GO:0005515
Bda13g01277 892 SMART WD40_4 692 732 IPR001680 GO:0005515
Bda13g01277 892 SMART WD40_4 649 688 IPR001680 GO:0005515
Bda13g01277 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 699 741 IPR001680 GO:0005515
Bda13g01277 892 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 892 IPR044716 GO:0003714
Bda13g01277 892 SUPERFAMILY WD40 repeat-like 609 892 IPR036322 GO:0005515
Bda13g01277 892 Gene3D - 601 749 IPR015943 GO:0005515
Bda13g01277 892 MobiDBLite consensus disorder prediction 146 178 - -
Bda13g01277 892 ProSitePatterns Trp-Asp (WD) repeats signature. 675 689 IPR019775 -
Bda13g01277 892 MobiDBLite consensus disorder prediction 418 557 - -
Bda13g01277 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 860 892 IPR001680 GO:0005515
Bda13g01277 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 860 892 - -
Bda13g01277 892 Coils Coil 115 155 - -
Bda13g01277 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 699 737 - -
Bda13g01277 892 MobiDBLite consensus disorder prediction 418 524 - -
Bda13g01277 892 Pfam WD domain, G-beta repeat 616 645 IPR001680 GO:0005515
Bda13g01277 892 Pfam WD domain, G-beta repeat 779 812 IPR001680 GO:0005515
Bda13g01277 892 Pfam WD domain, G-beta repeat 696 732 IPR001680 GO:0005515
Bda13g01277 892 Pfam WD domain, G-beta repeat 856 892 IPR001680 GO:0005515
Bda13g01277 892 Pfam WD domain, G-beta repeat 651 688 IPR001680 GO:0005515
Bda13g01277 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 656 691 - -
Bda13g01277 892 CDD WD40 610 892 - -
Bda13g01277 892 SMART Lish 7 39 IPR006594 GO:0005515
Bda13g01277 892 ProSiteProfiles LIS1 homology (LisH) motif profile. 7 39 IPR006594 GO:0005515
Bda13g01277 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 781 812 - -
Bda13g01277 892 Gene3D - 750 892 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01277 - - - pvy:116133053 1161.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00984 Bda-Chr1:43453870 Bda13g01277 Bda-Chr13:35120063 0 dispersed
Bda03g01121 Bda-Chr3:11716902 Bda13g01277 Bda-Chr13:35120063 6.24E-36 dispersed
Bda08g00029 Bda-Chr8:259649 Bda13g01277 Bda-Chr13:35120063 2.82E-46 dispersed
Bda11g00356 Bda-Chr11:3955412 Bda13g01277 Bda-Chr13:35120063 1.38E-11 dispersed
Bda12g00724 Bda-Chr12:34535635 Bda13g01277 Bda-Chr13:35120063 0 dispersed
Bda13g01277 Bda-Chr13:35120063 Bda04g00146 Bda-Chr4:3969533 4.58E-11 dispersed
Bda12g00718 Bda-Chr12:34188608 Bda13g01277 Bda-Chr13:35120063 1.57E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g425 . . . . . . . . . . . . . . . Cpe07g00268 . Bhi04g01023 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01277 . . . Bma02g00036 . . . . . . . . . . . . . . . . Cla08g01295 Cam08g1754 Cec08g1334 Cco08g1458 Clacu08g1451 . Cre08g1238 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16926 PF00400 WD40 0.0021 CL0186 Bda TR