Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01283 ATGGATGTTCCCCCCCTGGAACAAAGTGAAACGGAAAATTACCCTTTATTAATGGAAAGATCAGAAAATCTTAACAATAGTGAGCATATTGTTGATATATCGGATACTGTTGATACTTCGTCATCAAGCTTAGCTCATGGTAGACTGTACACTGGGTCAAATGCTTCACAGATTGAAGATCGGTCTTCAAGCATTACTCGAGTTCCTACTTCTCAACCTTCAGTTGTATCTAATGGATCTAACTCAAGAAATTCCTCGCTCATTCGAAGAGGGGAGACACGTCGCCGTCGGAGTCCACTGAATTCCACATTATGGATATCTATTGAACTCGTTATTACTTTAAGTCAGATTGTTGCAGCTGTAGTTGTTTTGTCACTTTCAAGGCAGGAGCATCCACGTGCCCCATTGTTTGAGTGGATTGTCGGATATGCATCAGGTTGTGTTGCTACCCTCCCTCTTCTCTACTGGCGCTATAGACATCATAATCAGACTTCAGAGCAAGATTCATCTCAATCCCGTCAGAGTTCTAGTCAAGTTTCTCTTTCAACTTCTAGGACATCAGAAGGGGAAGATCGACAAACCATTGTATCTCCTCCTAGAAGCAATCAAGGTTCTGGTGTACTAAGTCTGAGGCTGAAGATATTGGTAGAATATTTTAAGATGGGCTTGGATTGTTTTTTTGCCGTTTGGTTTGTAGTTGGCAATGTGTGGATCTTTGGTGGGCATTCATCAGCTTCTGAGTCTCCTAACTTGTACAGGTTATGTATAGTTTTTCTTACCTTTAGCTGTATTGGATATGCCATGCCCTTCATTCTATGTGTGACCATTTGCTGCTGTCTGCCTTGTATAATTTCCATCCTTGGGTTTAGAGAAGATCTGTCACAAACTAGGGGTGCCACTGCCGAATCAATTAATTCTTTGCCTACATACAAATTTAAAATGAAGAGAAGTAGAAGTGTGGATGAAAGTAGCTTGGGTGTTTTTGAAGGTGGGGTTGTGGCTGCTGGAACAGATAAGGAGCGTATGATTTCTGGAGAAGATGCTGTTTGTTGCATCTGCCTGGCTAAATACGCCAACAACGATGAATTAAGAGAGTTACCATGCTCTCATTTTTTTCACAAGGATTGTGTGGATAAATGGCTGAAGATAAATGCCTTATGCCCCCTCTGCAAGATGGCCGCTGGTGAAAGCATCTTAGGCTCACTCGACGACTCAAGCACTAACCACCAACGCGATGGTGAAAGTAGGGTGGGGACGACCTTGACCCTGTTTTAA 1275 42.51 MDVPPLEQSETENYPLLMERSENLNNSEHIVDISDTVDTSSSSLAHGRLYTGSNASQIEDRSSSITRVPTSQPSVVSNGSNSRNSSLIRRGETRRRRSPLNSTLWISIELVITLSQIVAAVVVLSLSRQEHPRAPLFEWIVGYASGCVATLPLLYWRYRHHNQTSEQDSSQSRQSSSQVSLSTSRTSEGEDRQTIVSPPRSNQGSGVLSLRLKILVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASESPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLSQTRGATAESINSLPTYKFKMKRSRSVDESSLGVFEGGVVAAGTDKERMISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKMAAGESILGSLDDSSTNHQRDGESRVGTTLTLF 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35146003 35148429 + Bda000088.1 Bda13g01283 19414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01283 424 ProSiteProfiles Zinc finger RING-type profile. 350 391 IPR001841 -
Bda13g01283 424 MobiDBLite consensus disorder prediction 56 87 - -
Bda13g01283 424 SMART ringv_2 349 391 IPR011016 GO:0008270
Bda13g01283 424 Pfam Ring finger domain 350 391 IPR001841 -
Bda13g01283 424 MobiDBLite consensus disorder prediction 56 94 - -
Bda13g01283 424 SMART ring_2 350 390 IPR001841 -
Bda13g01283 424 MobiDBLite consensus disorder prediction 167 205 - -
Bda13g01283 424 SUPERFAMILY RING/U-box 343 394 - -
Bda13g01283 424 MobiDBLite consensus disorder prediction 165 205 - -
Bda13g01283 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 412 - -
Bda13g01283 424 MobiDBLite consensus disorder prediction 403 424 - -
Bda13g01283 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 397 IPR013083 -
Bda13g01283 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00422 Bda-Chr7:5413694 Bda13g01283 Bda-Chr13:35146003 2.99E-51 dispersed
Bda08g00529 Bda-Chr8:5286865 Bda13g01283 Bda-Chr13:35146003 1.02E-45 dispersed
Bda10g00800 Bda-Chr10:42360855 Bda13g01283 Bda-Chr13:35146003 6.20E-86 dispersed
Bda12g00980 Bda-Chr12:40942561 Bda13g01283 Bda-Chr13:35146003 1.99E-55 dispersed
Bda13g00332 Bda-Chr13:4176181 Bda13g01283 Bda-Chr13:35146003 7.22E-47 dispersed
Bda01g00979 Bda-Chr1:43419273 Bda13g01283 Bda-Chr13:35146003 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01283 - - csv:101211818 592.038