Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01316 ATGGAGACGCCTTTACTGGAAGAAGAAACTGCGAAGAAAGTTCTTCGTCAGGTTGAGTTTTACTTTAGTGATAGTAACCTTCCTAGAGACAAATTTCTGAAAACAACCATCAGCGAGAGCCAAGATGGAATGGTCAGTTTGGCTCTGATATGCTCGTTTAGTCGGATGAGAAGCCATCTTAATTTGGGAGATGTGAAACCAGACGAAGTCTCACAAGATACGTTGCTGTCTGTTGCAGAAATTCTTAGGAGGTCTACTTCTATCAAGGTTTCAGGAGACGGGACGAAAATTGGTCGGACTTCTGAATTATCAAAACTAGAAGAGTTGGTGGAGCAGTTGGATATACGAACAATTGCTGCTTCGCCATTTGAATATGATGTGAAACTTGAAGACGTGGAGAATTTTTTTAGTAAATATGCTAAGGTTACCAGTGTGAGGCTGCCTCGTGTTGTTGCTGATAAGAGGTTTTTTTGCGGCACTGCTTTAGTTGAGTTTTCAACCGAAGAAGAAGCTAACAACATTTTGAATCAAAGTTTACTTCATGCAGGTGTAGAGTTAGAACTCAAACCAAAGAAAAATTTTGATGAAGAAAGAGAGATAGAGAGTGAGAAATTCAGTAACTCTTGTTCTTCCTTGAGTTCCATTCGTAAGATCGACTCTAGTACAGAGCCAAACTATCCAAAAGGTTTAATAGTTTCTTTTACTCTAAAGAACATCCCAGTGGGAGATTCTATTGAAGATAGTGGAAGTGATGCTCTAGTGTTTGATAGTTCTGCTCCATGCAAATCATATGGAAGGCAAGAATCCCCTAATAACAATTCAGAAAAAGCTGAATCAGCATCTGCAAATGCCAAAGATGAAGGGAGCCCTGGCGATCAAGAACAACCGCTTGAAGATCGCAGTGATGGAGTAGAAGAGTTTGAACAAAAAAATACAGTGTCTATTTACAAAGACAACATGAATGTTGTGTTGCGCGAGGATCTTAAGAGTATCTTTGAGAAGTTTGGCTCAGTGAAGTATATTGATTTCAAGATTGGAGAAGATTCAGGGTACATACGGTTTGAAGAGCCTGAAGCCGCTCAAAAATCACGTGCTGCTGCAGTTCTCACAGAACAAGGTGGCCTGATTGTGAAAAATTATATAGCCATCTTAGAACCTGTCACAGGCGATGCAGAAAAAGAGTATTGGAGTCTTCTTCGCGGTAGTCAAGATAAACGTCGTGACAACAAGGGAAACCGAGGAAGGGGTGGGAAGTTCAACAGAGGTGGCAAGCATGATAGACACAGAGAAAGTGATTCCTTTTTGGGTCGCCATAACAAGAGTCACAAAGTTGGAGCTGCCTAA 1344 40.92 METPLLEEETAKKVLRQVEFYFSDSNLPRDKFLKTTISESQDGMVSLALICSFSRMRSHLNLGDVKPDEVSQDTLLSVAEILRRSTSIKVSGDGTKIGRTSELSKLEELVEQLDIRTIAASPFEYDVKLEDVENFFSKYAKVTSVRLPRVVADKRFFCGTALVEFSTEEEANNILNQSLLHAGVELELKPKKNFDEEREIESEKFSNSCSSLSSIRKIDSSTEPNYPKGLIVSFTLKNIPVGDSIEDSGSDALVFDSSAPCKSYGRQESPNNNSEKAESASANAKDEGSPGDQEQPLEDRSDGVEEFEQKNTVSIYKDNMNVVLREDLKSIFEKFGSVKYIDFKIGEDSGYIRFEEPEAAQKSRAAAVLTEQGGLIVKNYIAILEPVTGDAEKEYWSLLRGSQDKRRDNKGNRGRGGKFNRGGKHDRHRESDSFLGRHNKSHKVGAA 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35376238 35379941 + Bda000125.1 Bda13g01316 19447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01316 447 PANTHER BNAANNG34180D PROTEIN 2 446 - -
Bda13g01316 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Bda13g01316 447 Pfam La domain 14 69 IPR006630 -
Bda13g01316 447 ProSiteProfiles xRRM domain profile. 306 427 IPR014886 GO:0003723
Bda13g01316 447 MobiDBLite consensus disorder prediction 291 305 - -
Bda13g01316 447 CDD LA_like_plant 10 99 - -
Bda13g01316 447 Gene3D - 6 106 IPR036388 -
Bda13g01316 447 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bda13g01316 447 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bda13g01316 447 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bda13g01316 447 PANTHER LUPUS LA PROTEIN-RELATED 2 446 IPR045180 -
Bda13g01316 447 SUPERFAMILY RNA-binding domain, RBD 325 413 IPR035979 GO:0003676
Bda13g01316 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Bda13g01316 447 SMART rrm1_1 117 189 IPR000504 GO:0003723
Bda13g01316 447 SMART rrm1_1 314 378 IPR000504 GO:0003723
Bda13g01316 447 Pfam RNA binding motif 323 415 IPR014886 GO:0003723
Bda13g01316 447 SMART la 8 100 IPR006630 -
Bda13g01316 447 MobiDBLite consensus disorder prediction 261 305 - -
Bda13g01316 447 MobiDBLite consensus disorder prediction 404 447 - -
Bda13g01316 447 Gene3D - 107 199 IPR012677 -
Bda13g01316 447 CDD RRM2_La_like 323 385 - -
Bda13g01316 447 Gene3D - 298 415 IPR012677 -
Bda13g01316 447 SUPERFAMILY Winged helix DNA-binding domain 5 104 IPR036390 -
Bda13g01316 447 MobiDBLite consensus disorder prediction 423 439 - -
Bda13g01316 447 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Bda13g01316 447 MobiDBLite consensus disorder prediction 262 279 - -
Bda13g01316 447 SUPERFAMILY RNA-binding domain, RBD 109 183 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01316 K11090 LA, SSB; lupus La protein - vvi:100250699 506.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01316 Bda-Chr13:35376238 Bda15g00027 Bda-Chr15:1680512 3.73E-09 dispersed
Bda13g01316 Bda-Chr13:35376238 Bda02g00092 Bda-Chr2:4495673 4.75E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33