Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01318 ATATCCATATATTCAGTTAGAGGCAGAGATGCTTCCTTCAACTCTGCAAGGTTGTCTTCCTCGTCCGCCATGTGCGACGAAACAGAATCTTTTGGTAAAGACACCATGAAAGCGTGCATTTGTTCTGCTACAATGTCACTCGGTACATCAAATGATCTTTCCGAGATGGAAGAGACGAAGGTTCACATAAACACCATGGAAAGATCAGTCAATCCTCTCTGTTGTGTATTGAATGATGCTGAGATGCCGATTAGAACGGAGCAATTAACTTCTCATTCGAGCATCAAAGAGGGCAAGGTGTATTTTAGTATGTTAATGAAAAATCTTGATGTTTTGGAGGAGACATTTGCAGATAGGGATGTAATAAATTTGGAAAGGGATATTTTGTTGCAACTAGGAAGGCTTGGAGCTCTAAATCTATTCAATGCATGTCTATCACTAAAAACATCAGCCTTTTTGGATTTATCTGAGGTCACTACCGAGACTATCGAAGATCAAAAGACGAGTGACGAAACAAAGTCGCTTGTACATAGTCCCATTGTCCACTCAGGAAGAAGGAAAGGAAGAAAATCTAGAAGAGGAGAAGCTACAGAAAAGGCTGAGCAATTTCTTTCCTTATCAAAACCTACTAAAGCTATTCGAAATAAATTTAGAAAACCGGCTGCGAGAAGAACATCCAACGATGGAAAAAGACTGATTATTGCAAGAAATGAAGCGGAAATGTCCAGGGGGGTTAAGGTTCTCGCAGAGTTGGAGAGAATTCGAGAAAGTTTTGAAAGGGAATCTGGGAAAGTTCCCAGCTTGAGTCGCTGGGCAGAAGCAGCTGGAATTGAAGAAAAAGAATTGCAGCAGAATTTGTACTTCGGTTGGTTCTGTAGGGATGAGATCATAAGAAGTTCTCGTCCCCTTGTTTTATTCCTTGCTAGAAACTACAGGAGATCTGGACTGTCACTGGATGATTTAATTCAGGCCGGAATCCTTGGTGTTCTTGAAGGCGCAAAAAGGTTCGATCAAACGAGGGGCTATAGGTTCTCGACCTATGTACAGTACTGGGTGAGGAAATCAATGTCAAGAATGGTGGACTGTTATTCAAGGGGTTTGAGTTTAAGCAGGGCCATAAACCAGATTCAAAAAGCTCGGAAAATGTTCGACCAAACGAATACGAGAAGCGTAGAGGACAGTGACATTGCAAGGGTCACCGGGCTGTCCTTAGCTAAAATCAGTGCGGCCGGCAGTTGCTTGAGAGTGGTGGGTTCAGTTGATCAGAAAATGGGGGATGGCCTTAATGCCAGATTCATGGAATATGTAGCTGATCTATCAATAGAGAGCCCAGAAGAAAGTGTGATGAGGAAACAAATGAGAAAAGACATTTATGATCTGCTTCATGGGTTGGATCTGAGAGAAAGGCAGGTTTTGTCTTTACGATACGGCCTCGACGACTATCGACCAAAGTCTCTGGCAGAAATCGGAAAACAACTCCTCGTGAGCAAAGAGTGGGTTCGAAAGCTAGAGAGGCGGGCTCTAACCAAGATAACCAATGAACAAAGTGTCAGAAACTTGACCACTTACTCGGTCGTGGTTCTTTTCGCCAACCTCTGCTTTGCCTCAACATCTACAGCCCATGATTTTTCTGTACTCGAGGCCTATGAGAATCTATTTCACCAGGATTATTCGCCTCCGGCTCCACCTCCGCCTCCTCCGCATCCACCATCGGTCTCATGCACCGATGATCTGAGCGGTGTTGGTTCTCTGGACTCTACATGTGAGATAATCAGCGATGTGAACCTCACTCGAGATGTATATATAGCAGGGAAGGGAAATTTTTATATCCTACCCGGAGTGAGTTTCAATTGTCCGACTCCTGGTTGCTCCATAACTATTAACATTACTGGTAATTTTAGCTTAAGCAATGATTCGGCCATTGTGACTGGGAGCTTCGAGTTGGTGGCGTATAATGCTAGCTTTTTCAATGGATCTGTGCTTAATACTACTGCTTTAGCTGGGAATCCTCCAGCCCAAACAAGTGGTACACCACAAGGGTTAGACGGGGGTGGCGGGGGCCATGGGGGGAGGGGTGCCTGTTGCTTGATGGACATGAAAAAGCTTCCTGAGGACGTCTGGGGTGGTGACGCATACTCTTGGTCGTCACTGCAGAACCCTTGTAGTTATGGAAGCCGGGGTGGAACTACTAGCAAAGAGGTTGAATATGGAGGATTGGGCGGCGGAAGGGTGAAAATGGAAATTCATGATTTTCTTTTGGTGGATGGTAGTATGCTGGCTGACGGGGGTTATGGAGGGACTAAAGGTGGTGGTGGTTCGGGTGGCAGCATCTACATCAAGGCTTACAAGATGATTGGCAATGGCAGAATTAGTGCTTGTGGAGGTGATGGACATGCTGGTGGTGGCGGTGGAAGAGTATCGGTTGATGTTTTCAGCAGGCATGATGACCCGCAGATTTTTGTTCATGGTGGGAGTAGTCTAGCATGTCCGGAAAATGCTGGTGCTGCTGGGACTCTGTATGATGCTGTTCCTAGGAGCCTTATTATAAGTAATCATAACCGGACTACAGACACAGACACACTTCTTTTGGAGTTTCCTAATCAACCTCTCATGACGAATGTTTATGTTAGAAATAATGCTAGGGCTACAGTGCCTTTGCTGTGGAGCCGTGTCCAGGTGCAGGGACAGATTAGTCTATTATCCGGTGGAGTGTTGAGCTTCGGGCTAGCCCACTATGCCTCTTCTGAGTTTGAGTTGTTGGCAGAAGAACTTTTGATGAGTGACTCTGAAATCAAGGTGTATGGGGCACTGCGCATGTCTGTAAAAATGTTTTTGATGTGGAATTCCAAAATGCTCATAGATGGTGGTGGGGATTCAACTGTTGCAACATCCTTGCTTGAAGCGAGTAATTTGATTGTTCTCCGAGAATCATCTGTCATACATTCTAATGCAAATCTGGGAGTTCATGGACAAGGTCTATTGAACTTATCAGGAGCCGGGGATTGGATTGAAGCGCAACGTCTAGTTCTGTCACTTTTTTACAGTATTCATGTTGGACCTGGATCTATTTTGCGGGGCCCCTTGGAGGATGCAGCAACAGATGCTGTAACCCCAAGGCTGTATTGTGAGAATCAAGGTTGCCCAGTTGAACTACTTCATCCTCCTGAAGATTGCAATGTGAACTCATCACTTTCTTTCACTCTTCAGATCTGTCGTGTTGAAGATATCAGCGTTGAGGGTCTTATAAAAGGTTCTGTTGTTCATTTTCACAGGGCAAGGACTGTAACTGTCCAGCCGTCTGGAACTATAAGTGCATCTGGAATGGGTTGCACAGGTGGCATGGGCCGAGGATATATCATAAGCAATGGGATTGGCAGTGGTGGCGGGCATGGTGGTAAAGGTGGGGCTGGGTGGTACAATGGTAGTAGTATAGAAGGTGGTATCTCATATGGAGATCCTGACTTGCCTTGTGAACTTGGTAGTGGAAGTGGAAATGAAAGTTCAGCTGGTTCAACTTCTGGTGGTGGTATCATTGTAATGGGCTCATCAGCTCATCCACTGTCAAGTTTATCCATAGCTGGCTTAATGACGGCTGATGGAGAAAATTTTGAAGGAACTGCTAAGAGGAAACAATTTGCAATTATTGGTGGTTCGAATGGAGGCCCTGGTGGTGGCTCTGGTGGAAGTATACTTCTATTTCTGCGTACTTTGGCTCTTGATGAGTCTGGTATGTTATCCAGTGTTGGGGGTTATGGTGGATCAAATGGGGGTGGTGGAGGCGGTGGTGGAAGAATTCATTTCCATTGGTCAGAGATACCTACAGGAGATGTATACCAGCCCATTGCCAGTGTTAAGGGACTGATAAATACAGGGTTAGTGGATAATTGGGTTAGCTTTCCAACAGCCCACAATGTGCCTATTAGCCCAACCCAATGCAAAAGTGGTTCATCTCCTTCTATGCCTGCAAAAGTGGCTCCTCCAGCAGCGGCATCTTCCTCGCATTCGGCGTCCTCTTTCCGGCGGTTTTCGGACTCAGAGGGAGGAGATGGTAAGGATGGGGGTGATAGAGGAGAAAATGGAACGTTGACTGGGAAAGCTTGTCCAAAAGGGCTGTATGGGACGTTCTGTGTGGAATGTCCGGTTGGTACATACAAGAATGACAGTGGATCTGATAAATTACTATGTCAACTTTGTCCTGCAAATGAACTTCCTCATCGAGCCATTTATATTGCCATTCGAGGTGGAATCGCTGAAACTCCTTGCCCTTACAAGTGTATTTCAGATAGATATCACATGCCACACTGCTATACAGCTCTTGAAGAATTGATTTATACCTTTGGTGGCCCTTGGTTATTTGGTCTTCTTCTTATCGGTGTCCTCATCCTATTAGCCATGGTGCTTAGTGTTGCACGAATGAAATTTGTTGGTGTTGATGAATTACTTGGTCCTACTCCCACTCAACAAGAAAACCAAATTGATCATTCTTTCCCCTTCTTGGAGTCATTGAATGAGGTCTTAGAAACAAACAGGGCAGAAGAGTCGCAGAGTCATGTGCACAGAATGTTTTTTATGGGTCCCAATACTTTCAGTGAGCCTTGGCATCTTCCGCACACCCCTCCTGATCAACTAAAAGAAATTGTATATGAAGGTGCATTCAACACTTTTGTTGATGAAATCAATGCTATATCCACTTATCAGTGGTGGGAAGGGGCAATGTACAGCATTCTTTGTGTTCTTGCCTACCCACTTGCATGGTCATGGCAGCAATGGCGCCGCAAAATAAAATTGCAACGACTGCGTGAGTTTGTTAGATCAGAGTATGATCATGCTTGCTTGCGTTCTTGTAGATCTCGTGCTCTTTATGAAGGAATTAAGGTCGCTGCAACTTCTGATTTAATGCTAGCATATGTTGACTTCTTCCTGGGTGGAGATGAAAAAAGAACTGATCTTCCTCCTCGCTTACAGCAAAGATTTCCATTATCTTTACTTTTTGGAGGGGATGGAAGCTACATGGCTTCTTTCTCACTTCATAATGATAATGTTCTTACTAGCCTCATGGGTCAGTCTGTCCCACCTACCACATGGTATCGCGTGGTTGCTGGTTTGAATGCACAATTACGATTGGTTCGTCGTGGCCGGTTGAGAGCGACATTTCAACCTGTTCTTAGATGGATTGAAAACTTTGCCAATCCTGCCCTTAAGAATCATGGTCTCCGTGTTGATCTTGCCTGGTTTCAGGCTACTGCTAGCGGTTATTATCAATATGGTCTCCTGTTATATGCAGCTGAAGAAAGCCATTCCATATCCATCCGAAATTCTCATGCAACAGCTAGAAATGATCCTTCAAAGAAGGTTCCTAGAGAAATTCCAGCTGGTCACTTGAGGGAAGAACGGCGATTAATCCCGGCAAATAGATCCAATGACAGTCAAACATGGGGAAAGAGGACGTATGGTGGCATTCTCAATTCTAATAGTTTAAAAGTGCTTGAAGAAAAGAGAGATGTATCTTCCCTTCTCTCTTTTATGCTTCATAACACGAAACCTGTTGGACACCAGGATCTCGTGGGCTTAGTTATCTCAATGCTACTTTTAGGAGATTTCAGCTTGGTTTTGCTTACTTTGCTCCAGTTGTATTCCTTTTCACTGGCAGATGTATTTCTAGTTTTGTTCGTCTTGCCTCTTAGCATTCTTCTTCCTTTCCCTGCTGGAATAAATGCTCTGTTCAGCCATGAACCTAGGAGATCAGCAGGCCTTGCACGCGTCTATGCTATGTGGAACATCACGTCTTTTATAAATGTTTTGGTTGCATTTATTTGTGGATACGTTCACTTGAAATCACAATCATCATCAAGTAAAAAGCAGCCCAACTTTCAGCCATGGAATATTAGCATGGACGAAAGCGAATGGTGGTTTTTTCCGGCAGGTCTTGTTGTCTGTAAATTGCTCCAATCCCGACTCATTAATTGGCACGTGGGGAACCTGGAGATACAGGACCGATCGTTGTACAGTAATGATTTTGATCTCTTCTGGCAGTCTTGA 6039 44.59 ISIYSVRGRDASFNSARLSSSSAMCDETESFGKDTMKACICSATMSLGTSNDLSEMEETKVHINTMERSVNPLCCVLNDAEMPIRTEQLTSHSSIKEGKVYFSMLMKNLDVLEETFADRDVINLERDILLQLGRLGALNLFNACLSLKTSAFLDLSEVTTETIEDQKTSDETKSLVHSPIVHSGRRKGRKSRRGEATEKAEQFLSLSKPTKAIRNKFRKPAARRTSNDGKRLIIARNEAEMSRGVKVLAELERIRESFERESGKVPSLSRWAEAAGIEEKELQQNLYFGWFCRDEIIRSSRPLVLFLARNYRRSGLSLDDLIQAGILGVLEGAKRFDQTRGYRFSTYVQYWVRKSMSRMVDCYSRGLSLSRAINQIQKARKMFDQTNTRSVEDSDIARVTGLSLAKISAAGSCLRVVGSVDQKMGDGLNARFMEYVADLSIESPEESVMRKQMRKDIYDLLHGLDLRERQVLSLRYGLDDYRPKSLAEIGKQLLVSKEWVRKLERRALTKITNEQSVRNLTTYSVVVLFANLCFASTSTAHDFSVLEAYENLFHQDYSPPAPPPPPPHPPSVSCTDDLSGVGSLDSTCEIISDVNLTRDVYIAGKGNFYILPGVSFNCPTPGCSITINITGNFSLSNDSAIVTGSFELVAYNASFFNGSVLNTTALAGNPPAQTSGTPQGLDGGGGGHGGRGACCLMDMKKLPEDVWGGDAYSWSSLQNPCSYGSRGGTTSKEVEYGGLGGGRVKMEIHDFLLVDGSMLADGGYGGTKGGGGSGGSIYIKAYKMIGNGRISACGGDGHAGGGGGRVSVDVFSRHDDPQIFVHGGSSLACPENAGAAGTLYDAVPRSLIISNHNRTTDTDTLLLEFPNQPLMTNVYVRNNARATVPLLWSRVQVQGQISLLSGGVLSFGLAHYASSEFELLAEELLMSDSEIKVYGALRMSVKMFLMWNSKMLIDGGGDSTVATSLLEASNLIVLRESSVIHSNANLGVHGQGLLNLSGAGDWIEAQRLVLSLFYSIHVGPGSILRGPLEDAATDAVTPRLYCENQGCPVELLHPPEDCNVNSSLSFTLQICRVEDISVEGLIKGSVVHFHRARTVTVQPSGTISASGMGCTGGMGRGYIISNGIGSGGGHGGKGGAGWYNGSSIEGGISYGDPDLPCELGSGSGNESSAGSTSGGGIIVMGSSAHPLSSLSIAGLMTADGENFEGTAKRKQFAIIGGSNGGPGGGSGGSILLFLRTLALDESGMLSSVGGYGGSNGGGGGGGGRIHFHWSEIPTGDVYQPIASVKGLINTGLVDNWVSFPTAHNVPISPTQCKSGSSPSMPAKVAPPAAASSSHSASSFRRFSDSEGGDGKDGGDRGENGTLTGKACPKGLYGTFCVECPVGTYKNDSGSDKLLCQLCPANELPHRAIYIAIRGGIAETPCPYKCISDRYHMPHCYTALEELIYTFGGPWLFGLLLIGVLILLAMVLSVARMKFVGVDELLGPTPTQQENQIDHSFPFLESLNEVLETNRAEESQSHVHRMFFMGPNTFSEPWHLPHTPPDQLKEIVYEGAFNTFVDEINAISTYQWWEGAMYSILCVLAYPLAWSWQQWRRKIKLQRLREFVRSEYDHACLRSCRSRALYEGIKVAATSDLMLAYVDFFLGGDEKRTDLPPRLQQRFPLSLLFGGDGSYMASFSLHNDNVLTSLMGQSVPPTTWYRVVAGLNAQLRLVRRGRLRATFQPVLRWIENFANPALKNHGLRVDLAWFQATASGYYQYGLLLYAAEESHSISIRNSHATARNDPSKKVPREIPAGHLREERRLIPANRSNDSQTWGKRTYGGILNSNSLKVLEEKRDVSSLLSFMLHNTKPVGHQDLVGLVISMLLLGDFSLVLLTLLQLYSFSLADVFLVLFVLPLSILLPFPAGINALFSHEPRRSAGLARVYAMWNITSFINVLVAFICGYVHLKSQSSSSKKQPNFQPWNISMDESEWWFFPAGLVVCKLLQSRLINWHVGNLEIQDRSLYSNDFDLFWQS 2012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35414222 35432247 + Bda000127.1 Bda13g01318 19449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01318 2012 PANTHER - 527 1290 - -
Bda13g01318 2012 MobiDBLite consensus disorder prediction 1344 1358 - -
Bda13g01318 2012 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 424 512 IPR013324 -
Bda13g01318 2012 Pfam Sigma-70, region 4 460 511 IPR007630 GO:0003700|GO:0006352|GO:0006355
Bda13g01318 2012 Gene3D - 187 364 - -
Bda13g01318 2012 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 234 360 IPR013325 GO:0003700|GO:0006352|GO:0006355
Bda13g01318 2012 SMART GCC2_GCC3_2 1373 1435 - -
Bda13g01318 2012 MobiDBLite consensus disorder prediction 1310 1359 - -
Bda13g01318 2012 Pfam Sigma-70 region 3 372 447 IPR007624 GO:0003700|GO:0006352|GO:0006355
Bda13g01318 2012 Gene3D - 365 516 - -
Bda13g01318 2012 PANTHER - 1347 2011 - -
Bda13g01318 2012 Pfam Sigma-70 region 2 297 359 IPR007627 GO:0003700|GO:0006352|GO:0006355
Bda13g01318 2012 PANTHER EPHRIN TYPE-B RECEPTOR 527 1290 - -
Bda13g01318 2012 PANTHER EPHRIN TYPE-B RECEPTOR 1347 2011 - -
Bda13g01318 2012 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 293 513 IPR014284 GO:0003700|GO:0006352|GO:0006355
Bda13g01318 2012 CDD Sigma70_r4 454 511 - -
Bda13g01318 2012 PRINTS Major sigma-70 factor signature 464 476 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bda13g01318 2012 PRINTS Major sigma-70 factor signature 485 500 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bda13g01318 2012 PRINTS Major sigma-70 factor signature 500 511 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bda13g01318 2012 PRINTS Major sigma-70 factor signature 320 333 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bda13g01318 2012 PRINTS Major sigma-70 factor signature 344 352 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bda13g01318 2012 MobiDBLite consensus disorder prediction 166 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01318 - - - zju:107420918 2018.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02032 Bda-Chr1:56604625 Bda13g01318 Bda-Chr13:35414222 0 dispersed
Bda07g00116 Bda-Chr7:1387626 Bda13g01318 Bda-Chr13:35414222 5.21E-171 dispersed
Bda13g00820 Bda-Chr13:9727872 Bda13g01318 Bda-Chr13:35414222 5.78E-26 dispersed
Bda15g00776 Bda-Chr15:11604146 Bda13g01318 Bda-Chr13:35414222 4.86E-11 dispersed
Bda13g01318 Bda-Chr13:35414222 Bda03g00923 Bda-Chr3:8137504 2.46E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g41 . . . . . . . . . . . . . Car12g00216 . Cpe07g00200 . Bhi04g00880 . . . Hepe10g0388 . Lcy13g1442 . . . . . . . . . . . . . . . . . . Bda13g01318 . . . Bma02g00074 . . . . . . . . . . . . . . . . Cla08g01199 Cam08g1661 Cec08g1238 Cco08g1357 Clacu08g1358 . Cre08g1145 . Csa02g02244 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001361 2 3 2 2 2 2 3 2 2 2 2 2 3 2 1 3 2 4 3 1 2 2 2 2 2 2 2 12 2 1 74