Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01324 ATGGCGAGCACACTCAAGGAGATGAAAAACGGTGGCGTTTCGTGTGGAGGTGTTGACGATGTTTATGGTGAAGATACAGCCACTGAGGATCAGCTTGTCACTCCCTGGACTGTCTCTGTTGCTAGTGGTTATACATTGCTGAGAGATCCTCACTACAACAAAGGCCTTGCCTTCACTGAAAAGGAAAGAGATGCGCATTACTTGCGCGGTCTCCTTCCTCCTACATTCCTGACTCAAGAGCTTCAGGAGAAGAGATTGATGCATAACATTTCCCAATATAAAGTTCCGCTGCAGAAATACATCGCCTTGATGGATCTTCAGGAGCGAAACCAGAGGTTGTTCTACAAGCTTATGATCGATAATGTGGAGGAATTACTCCCAATTGTGTACACTCCGACAGTCGGAGAGGCTTGCCAGAAATACGGGAGCATTTTCAGGCGCCCTCAAGGACTCTTCATTAGTTTGAAAGAGAAGGGGAAGATTCGCGAAGTATTGAAAAACTGGCCGGAAAGAAATATTCAAGTCATTGTTGTTACGGATGGAGAGCGCATATTGGGTCTTGGAGATCTTGGTTGCCAAGGCATGGGAATTCCAGTTGGAAAACTTGCTTTGTATACAGCTCTTGGAGGAATTCGGCCCTCTGCTTGCTTGCCTATTACCATTGATGTTGGTACAAACAACCAGCAGCTGTTGAATGACGAGTTCTACATTGGGCTTCGACAGAAAAGAGCGACCGGACAGGAATATTTGGAGCTTCTAGATGAGTTCATGTCTGCCGTTAAACAAACTTACGGAGAGAAAATCTTAATCCAATTTGAAGATTTTGGCAACCACAATGCATTTGAACTTCTTTCCAGATACAGATCGACACATCTCGTATTCAATGATGACATTCAGGGGACGGCATCTGTGGTTCTGGCTGGACTCCTTGCATCTCTGAAACTAGTTGGCGGAAGCTTAGCGGACCATAAGTTCTTGTTCTTGGGTGCCGGAGAGGCTGGAACTGGTATAGCTGAACTTATAGCCATAGAGATATCCAAAAAGACTAATGCTCCAGTTGAAGAGTCTCGGAAGAAGATTTGGCTCGTCGACTCTAAGGGACTAATTGTCCGGTCTCGTTTAGATTCGCTTCAACACTTCAAAAAACCTTGGGCTCACGATCACGAGGAAGTTAGAGATCTTCTGGGCTGTGTAAACGCGATTAAGCCATCGGTGTTGATTGGAACTTCCGGAGTTGGAAAGACGTTCACGAAGGAGGTTGTGGAGGCCATGGCTTGCTTTAATGAGAAACCCTTAATTCTTGCTCTTTCAAACCCAACTTCCCAATCTGAGTGTACTGCTGAAGAAGCTTACTCATGGAGCAAGGGCCGGGCAATCTTCGCTAGTGGAAGTCCCTTCGATCCTGTTGAATGTAACGGGAAAATCGTTGTGCCTGGCCAGGCCAACAATGCTTACATTTTCCCCGGTTTTGGACTCGGTCTGATCATGTCCGGTACGATCCGTGTCCATGACGACATGCTATTGGCCGCGGCGGAAGCTCTGGCCGGACAGGTTTCGCAGGAAAACTTCGACAAGGGATTGATTTACCCTCCTTTCGCTAGTATTAGAAAGATATCTGCCCACATTGCAGCTAATGTAGCTGCTAAGGCTTATGAACTCGGCCTCGCATCCCGCCTTCCTCGTCCTAAGGATCTGGTCAAGTATGCTGAGAGCTGCATGTACAGCCCTCTCTACCATAGCTATCTTTAA 1749 46.83 MASTLKEMKNGGVSCGGVDDVYGEDTATEDQLVTPWTVSVASGYTLLRDPHYNKGLAFTEKERDAHYLRGLLPPTFLTQELQEKRLMHNISQYKVPLQKYIALMDLQERNQRLFYKLMIDNVEELLPIVYTPTVGEACQKYGSIFRRPQGLFISLKEKGKIREVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITIDVGTNNQQLLNDEFYIGLRQKRATGQEYLELLDEFMSAVKQTYGEKILIQFEDFGNHNAFELLSRYRSTHLVFNDDIQGTASVVLAGLLASLKLVGGSLADHKFLFLGAGEAGTGIAELIAIEISKKTNAPVEESRKKIWLVDSKGLIVRSRLDSLQHFKKPWAHDHEEVRDLLGCVNAIKPSVLIGTSGVGKTFTKEVVEAMACFNEKPLILALSNPTSQSECTAEEAYSWSKGRAIFASGSPFDPVECNGKIVVPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAAAEALAGQVSQENFDKGLIYPPFASIRKISAHIAANVAAKAYELGLASRLPRPKDLVKYAESCMYSPLYHSYL 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35532568 35537177 - Bda000135.1 Bda13g01324 19455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01324 582 PANTHER MALIC ENZYME 12 581 - -
Bda13g01324 582 SMART Malic_M_2 298 551 IPR012302 GO:0051287
Bda13g01324 582 PANTHER MALIC ENZYME-RELATED 12 581 - -
Bda13g01324 582 Gene3D - 41 295 IPR037062 GO:0004471
Bda13g01324 582 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 20 297 IPR046346 -
Bda13g01324 582 Pfam Malic enzyme, N-terminal domain 107 288 IPR012301 GO:0004471
Bda13g01324 582 Gene3D - 296 582 - -
Bda13g01324 582 PRINTS Malic enzyme signature 428 444 IPR001891 GO:0004470|GO:0004471
Bda13g01324 582 PRINTS Malic enzyme signature 209 231 IPR001891 GO:0004470|GO:0004471
Bda13g01324 582 PRINTS Malic enzyme signature 294 310 IPR001891 GO:0004470|GO:0004471
Bda13g01324 582 PRINTS Malic enzyme signature 173 202 IPR001891 GO:0004470|GO:0004471
Bda13g01324 582 PRINTS Malic enzyme signature 269 287 IPR001891 GO:0004470|GO:0004471
Bda13g01324 582 PRINTS Malic enzyme signature 325 341 IPR001891 GO:0004470|GO:0004471
Bda13g01324 582 PRINTS Malic enzyme signature 113 137 IPR001891 GO:0004470|GO:0004471
Bda13g01324 582 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 298 581 IPR036291 -
Bda13g01324 582 CDD NAD_bind_1_malic_enz 298 576 - -
Bda13g01324 582 Pfam Malic enzyme, NAD binding domain 298 550 IPR012302 GO:0051287
Bda13g01324 582 ProSitePatterns Malic enzymes signature. 294 310 IPR015884 GO:0004471
Bda13g01324 582 SMART malic_2 107 288 IPR012301 GO:0004471
Bda13g01324 582 PIRSF ME 14 582 IPR001891 GO:0004470|GO:0004471
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01324 K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] - vvi:100249166 975.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00574 Bda-Chr5:53641420 Bda13g01324 Bda-Chr13:35532568 0 dispersed
Bda09g01129 Bda-Chr9:41969571 Bda13g01324 Bda-Chr13:35532568 0 dispersed
Bda13g00459 Bda-Chr13:5534196 Bda13g01324 Bda-Chr13:35532568 8.92E-125 dispersed
Bda13g01324 Bda-Chr13:35532568 Bda04g00885 Bda-Chr4:58617383 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000336 4 5 1 2 4 4 7 4 4 4 4 4 7 4 3 7 4 5 8 4 4 4 4 4 2 4 4 7 9 4 135