Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01328 CTCCCAATGGCCGACTCGGGAACCTCTCGTCACTGCAAATTGTCCGGTAAAGTTGTCTCAGTCGCTGCCGGCGAATCTCACACCCTCGCTCTCACCGGAGATGGATGCGTCTATTCATGGGGAAAGGGAATGTTTGGGCGTCTCGGCACTGGTTCTGAAACCGATGAGCTTTCTCCCGTTCTAGTCAATTTCGAAATGGAAGAAGAGAGGCTCAAATTCATAGGAGTTGCTGCTGGTGCTTATCACAGTCTTGCTCTTGCAGATGCGGAAATTAAACTGCCATTAAAGGTACACATGGCTTTGATTTTGTCTGAATTATTCTGTAAGTTCATGATGCTTATACATATTATTTTTGTCCCACCTAAGTTCTGTCTGGTTAAAGCCGGTGGAATGATGTCTCTTGCAATTGACAATCGCGGTGTCCTCTGGATGTGGGGCGATTTTCCGGAACCAAATGCCAACAACGAAGGCCAGTTCTCTCTTACAAGTAGTTTCATTCCGACCCCTATCCAAGATTTTTATGGACTCACTGTTGTTAAAGTTGGATGTGGAAATGAACATGTAGTTGTTCTTGTTAGTGCTGGAGAAACCCACAATGTTGAAGATTTGGCTTGCTACTCTTGGGGAAACAACAGCCTCGGCCAATTAGGACTCGGAGATAGAGAGAGCCGGCTGAATCCGCAGCTCATCGAAAAGTTCAACAAAGAATCTCCTTGGAAAGTTTACGAGGTAGCTTGTGGGGCATCCCACACAGCTCTGCTAAGTCACAGAAAGTGTTCAAACGGAAAAATAGAGAGTCTATGCTGGACTTTCGGTCTAGGAGAAAACGGGCAGCTTGGTCACGGAATGACCCGAAGTGAATCGCTTCCTCAACCTGTTAAAGAATTGCCAAATGACGTGGAGCTGATTTCTGTGGACTGTGGATTGTTTCACACGAGTGTTGTATCATCGGACGGTGATGTATGGTCTTGGGGGATGGAGAAGGGTCTCGGGCTATGCCCAGATGCATGTTTTGCTGGCACTGATGCAGGAGATGCTCTCTCTCCCCTGTTGATATCTAAATTTGTAGATCCCGTTCAGGTGGCATGTGGGGCCGCACATACTGTTGTTGTCGCACATTCTGGATTTAAGCTTTGGTCATGGGGAAGAGGAAGAAATGGAGTTCTTGGAAATAATAAGACAACAGATTGCTATGCACCACTACCTCTGCTGTGGCCTCCAATGGAGGTTTTCAAGCGAGACGAACCGAAGACGGACTGGGATGAAAGTAAAACCAGAGAAGAAACTCTTTCAGAGAAGGAAGATGAAAAGAAAATGGACAATAAAGTGACTGTTTTGATGGGAGAAATGAGGATTCTTCAAGAGAGACTTTCAATGGTGGAGAAGTATGCTAGTGTTCTTCACAGTTGTGTGTTTGGAAAACCATTGGAGGAGAAAGACATTCCTGATTTGTTGCAGAGAATTGGTAGCTTAGAGATTGGAAGAGAGTGGGAAAACATGTTGGAGGAGGCGGATCGATCGAAGCTTGTTCGGTTGGAAGCGTTTTACCGGAATATGCTCGGCGACGTTAAAGACAAGCTATTGAAGAGAAAGATCCAGGAGCTTATAAAGGATTGCCTCCATTCAATATAA 1632 45.65 LPMADSGTSRHCKLSGKVVSVAAGESHTLALTGDGCVYSWGKGMFGRLGTGSETDELSPVLVNFEMEEERLKFIGVAAGAYHSLALADAEIKLPLKVHMALILSELFCKFMMLIHIIFVPPKFCLVKAGGMMSLAIDNRGVLWMWGDFPEPNANNEGQFSLTSSFIPTPIQDFYGLTVVKVGCGNEHVVVLVSAGETHNVEDLACYSWGNNSLGQLGLGDRESRLNPQLIEKFNKESPWKVYEVACGASHTALLSHRKCSNGKIESLCWTFGLGENGQLGHGMTRSESLPQPVKELPNDVELISVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPDACFAGTDAGDALSPLLISKFVDPVQVACGAAHTVVVAHSGFKLWSWGRGRNGVLGNNKTTDCYAPLPLLWPPMEVFKRDEPKTDWDESKTREETLSEKEDEKKMDNKVTVLMGEMRILQERLSMVEKYASVLHSCVFGKPLEEKDIPDLLQRIGSLEIGREWENMLEEADRSKLVRLEAFYRNMLGDVKDKLLKRKIQELIKDCLHSI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35547716 35549919 + Bda000139.1 Bda13g01328 19459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01328 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 89 IPR000408 -
Bda13g01328 543 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 102 542 - -
Bda13g01328 543 Gene3D - 4 91 IPR009091 -
Bda13g01328 543 Gene3D - 114 413 IPR009091 -
Bda13g01328 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 374 IPR000408 -
Bda13g01328 543 SUPERFAMILY RCC1/BLIP-II 121 406 IPR009091 -
Bda13g01328 543 PRINTS Chromosome condensation regulator RCC1 signature 181 197 IPR000408 -
Bda13g01328 543 PRINTS Chromosome condensation regulator RCC1 signature 73 86 IPR000408 -
Bda13g01328 543 PRINTS Chromosome condensation regulator RCC1 signature 308 326 IPR000408 -
Bda13g01328 543 PRINTS Chromosome condensation regulator RCC1 signature 371 392 IPR000408 -
Bda13g01328 543 PRINTS Chromosome condensation regulator RCC1 signature 36 52 IPR000408 -
Bda13g01328 543 PRINTS Chromosome condensation regulator RCC1 signature 140 156 IPR000408 -
Bda13g01328 543 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 88 - -
Bda13g01328 543 SUPERFAMILY RCC1/BLIP-II 13 87 IPR009091 -
Bda13g01328 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 203 257 IPR000408 -
Bda13g01328 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 318 IPR000408 -
Bda13g01328 543 MobiDBLite consensus disorder prediction 415 436 - -
Bda13g01328 543 Pfam Regulator of chromosome condensation (RCC1) repeat 268 314 IPR000408 -
Bda13g01328 543 Pfam Regulator of chromosome condensation (RCC1) repeat 205 254 IPR000408 -
Bda13g01328 543 Pfam Regulator of chromosome condensation (RCC1) repeat 34 86 IPR000408 -
Bda13g01328 543 Pfam Regulator of chromosome condensation (RCC1) repeat 318 371 IPR000408 -
Bda13g01328 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 9 88 - -
Bda13g01328 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 102 542 - -
Bda13g01328 543 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 21 31 IPR000408 -
Bda13g01328 543 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 244 254 IPR000408 -
Bda13g01328 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 140 194 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01328 - - - qsu:111998155 671.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01328 Bda-Chr13:35547716 Bda10g00412 Bda-Chr10:36339597 2.75E-16 dispersed
Bda01g00698 Bda-Chr1:34123933 Bda13g01328 Bda-Chr13:35547716 3.54E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33