Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01332 ATGACTTCTGAAGCTCGAAATTCAGAAACTGAGAGCACCTCAAATTCAAACTCAAACTCTTTCTCGTCGACGCCAGCGTCCCCTTCTTCGCCACCCTCCACAAAATCCCTTCAGGACCCTCTGTTAATCCCTAATTCTCCTTCGCCGGAACTGAAGAAGAACAAGCGAATGAGGGATTCCAGCAAGCACCCTCTTTACAGAGGCGTTCGAATGCGCAGTTGGGGCAAATGGGTGTCTGAAATTCGCGAGCCTCGCAAGAAATCTCGCATTTGGCTTGGAACTTTTCCTACTGCTGAAATGGCTGCTAGAGCTCACGACGTCGCCGCCTTGAGCATCAAAGGTAGTTCTGCCATTCTCAACTTCCCCGACCTCGTCGACTCTCTTCCTCGCCCGGTCTCTCTCGCTCCGAGAGATGTTCAAGCAGCCGCAGCAAAGGCAGCCCAGATGGAGAAATTCGAGTCTACGTCTTCAACGCCGTCGTCAACAATAGTTTCAGCGATGGAATTTTTGGCGTCGACTGCTAGCGAATCGGATGATTTAGGGGAGATAGTTGAGTTGCCAAGCTTAGGGACGAGCTACGAGTCGAACGAGTTGAGAAATGAGTTTGTGTTAGTGGACTCAGTGGATGGTTGGTTATACCAACCACCATGGTTGCAGAGCTTGGAGGATTGTGGGCTCTACAATGCCAGCGAGGAGTTGACCGCAGGAAATTGTGGTTTGATATCAAGCAGTTTTGAGGGTTTGCTTTGGAACTATTGA 759 50.07 MTSEARNSETESTSNSNSNSFSSTPASPSSPPSTKSLQDPLLIPNSPSPELKKNKRMRDSSKHPLYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPDLVDSLPRPVSLAPRDVQAAAAKAAQMEKFESTSSTPSSTIVSAMEFLASTASESDDLGEIVELPSLGTSYESNELRNEFVLVDSVDGWLYQPPWLQSLEDCGLYNASEELTAGNCGLISSSFEGLLWNY 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35584239 35584997 - Bda000143.1 Bda13g01332 19463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01332 252 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Bda13g01332 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 251 - -
Bda13g01332 252 MobiDBLite consensus disorder prediction 1 64 - -
Bda13g01332 252 CDD AP2 64 124 IPR001471 GO:0003700|GO:0006355
Bda13g01332 252 MobiDBLite consensus disorder prediction 1 43 - -
Bda13g01332 252 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Bda13g01332 252 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Bda13g01332 252 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Bda13g01332 252 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Bda13g01332 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 251 - -
Bda13g01332 252 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Bda13g01332 252 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01417 Bda-Chr11:18701320 Bda13g01332 Bda-Chr13:35584239 3.69E-53 dispersed
Bda13g00507 Bda-Chr13:6045528 Bda13g01332 Bda-Chr13:35584239 9.97E-51 dispersed
Bda01g00937 Bda-Chr1:42745157 Bda13g01332 Bda-Chr13:35584239 1.98E-116 wgd
Bda11g00829 Bda-Chr11:8213516 Bda13g01332 Bda-Chr13:35584239 1.02E-82 wgd
Bda13g01332 Bda-Chr13:35584239 Bda03g00430 Bda-Chr3:3710423 2.29E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16931 PF00847 AP2 8.90E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01332 K09286 - pvy:116140693 283.108