Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g01332 | ATGACTTCTGAAGCTCGAAATTCAGAAACTGAGAGCACCTCAAATTCAAACTCAAACTCTTTCTCGTCGACGCCAGCGTCCCCTTCTTCGCCACCCTCCACAAAATCCCTTCAGGACCCTCTGTTAATCCCTAATTCTCCTTCGCCGGAACTGAAGAAGAACAAGCGAATGAGGGATTCCAGCAAGCACCCTCTTTACAGAGGCGTTCGAATGCGCAGTTGGGGCAAATGGGTGTCTGAAATTCGCGAGCCTCGCAAGAAATCTCGCATTTGGCTTGGAACTTTTCCTACTGCTGAAATGGCTGCTAGAGCTCACGACGTCGCCGCCTTGAGCATCAAAGGTAGTTCTGCCATTCTCAACTTCCCCGACCTCGTCGACTCTCTTCCTCGCCCGGTCTCTCTCGCTCCGAGAGATGTTCAAGCAGCCGCAGCAAAGGCAGCCCAGATGGAGAAATTCGAGTCTACGTCTTCAACGCCGTCGTCAACAATAGTTTCAGCGATGGAATTTTTGGCGTCGACTGCTAGCGAATCGGATGATTTAGGGGAGATAGTTGAGTTGCCAAGCTTAGGGACGAGCTACGAGTCGAACGAGTTGAGAAATGAGTTTGTGTTAGTGGACTCAGTGGATGGTTGGTTATACCAACCACCATGGTTGCAGAGCTTGGAGGATTGTGGGCTCTACAATGCCAGCGAGGAGTTGACCGCAGGAAATTGTGGTTTGATATCAAGCAGTTTTGAGGGTTTGCTTTGGAACTATTGA | 759 | 50.07 | MTSEARNSETESTSNSNSNSFSSTPASPSSPPSTKSLQDPLLIPNSPSPELKKNKRMRDSSKHPLYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPDLVDSLPRPVSLAPRDVQAAAAKAAQMEKFESTSSTPSSTIVSAMEFLASTASESDDLGEIVELPSLGTSYESNELRNEFVLVDSVDGWLYQPPWLQSLEDCGLYNASEELTAGNCGLISSSFEGLLWNY | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 35584239 | 35584997 | - | Bda000143.1 | Bda13g01332 | 19463 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g01332 | 252 | SMART | rav1_2 | 65 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g01332 | 252 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 5 | 251 | - | - | |
Bda13g01332 | 252 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Bda13g01332 | 252 | CDD | AP2 | 64 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g01332 | 252 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Bda13g01332 | 252 | PRINTS | Ethylene responsive element binding protein signature | 66 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g01332 | 252 | PRINTS | Ethylene responsive element binding protein signature | 88 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g01332 | 252 | ProSiteProfiles | AP2/ERF domain profile. | 65 | 122 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g01332 | 252 | SUPERFAMILY | DNA-binding domain | 65 | 123 | IPR016177 | GO:0003677 | |
Bda13g01332 | 252 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 5 | 251 | - | - | |
Bda13g01332 | 252 | Pfam | AP2 domain | 64 | 114 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g01332 | 252 | Gene3D | AP2/ERF domain | 65 | 123 | IPR036955 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g01417 | Bda-Chr11:18701320 | Bda13g01332 | Bda-Chr13:35584239 | 3.69E-53 | dispersed | |
Bda13g00507 | Bda-Chr13:6045528 | Bda13g01332 | Bda-Chr13:35584239 | 9.97E-51 | dispersed | |
Bda01g00937 | Bda-Chr1:42745157 | Bda13g01332 | Bda-Chr13:35584239 | 1.98E-116 | wgd | |
Bda11g00829 | Bda-Chr11:8213516 | Bda13g01332 | Bda-Chr13:35584239 | 1.02E-82 | wgd | |
Bda13g01332 | Bda-Chr13:35584239 | Bda03g00430 | Bda-Chr3:3710423 | 2.29E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16931 | PF00847 | AP2 | 8.90E-14 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g01332 | K09286 | - | pvy:116140693 | 283.108 |