Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01333 ATGAGGGAAATTCTTGAAATGGTTCAAGAATTTTTCTCGTTTTGTCAGGTAGAAAAGAGGAGATTGCCATGGCTAATTGGAACTATGGTGGCTGTGATTTTGGTCTTCCAGTACTTTGAACTTCCATATGAGAATGTTGTATCTTCTTTGTTTTCTGCTGGAAAAGGTTCGTTTGTCGGGGAAAATAGGACCCACGCTGCCTATTCTCAGTTTGAGTCCAGCGTAAGTAATAATGTGGCATCATCCACTGATATGAACTCCCCGTTTTCTCAAGACATTGATGGAACAAGTAATAATGAAGGGGGAGGAGATGGTGAGTTCGAATCTGAGATAAATAGAGGTTTGAATAAATCTTTAGGATCAGACGAGGATGATGATTACGAGGCGTCTCTTCCTTGGGATTCAGTAGAATCAAGCAAAAATTCAACAATGGATGATCTCGAATCTTCAGAATCTGAATCTAGCTTGGAGGATGTTGGAGGAAAGAATCAGAGTTTGTTCCAGAACAAAGATTCGTCCCATAATGTCTCAATAGAAATAAGGACGGAGAATGATACCAAGATATTAGAGAAGGAATCAGAGAACAATCAAAGGTCGTATGCTGGTTTGGCATCTCCTTCACCTGCTGGACAACCTATGTATGCGTCAGAAAACACCGTCTCACCCACTGCATCTGCTGAATCTAATGCATTTTCTAAGGAGAAAGATGACACTACTCCACACAATAAATCTGAGAAATCTGGGAAATTGCCAAGTGATTTCATCTTGTCAGCCAATACATTTGTTGCCGATAAAGAATCAAAGGTTCCTCCCCCTCCTACAGGAATTTATACCATATCTGAGATGAAGAAATTGTTCATCAAGAATCGAGCATCATTCAATCCAACTGTACCGCTATGGTCTTCAGCAGTTGACCAACAACTACTGCGAGCAAAAACACAAATCGAGCAGGCTCCTGCAATCGATAACGATCCAAATCTTCATCCTCCATTATTTCGGAACTTTTCCATGTTCAGAAGGAGCTATGAACTAATGGAGGATAATCTCAAAGTCTATATTTACAGAGAAGGAGAAAAGCCAATCTTCCACCAGGGTCCAATCAAAGGCATATATGCTTCTGAGGGATGGTTCATGAGGCTCCTAGAAGCTAACAAGAAATTCGTCACAAAAAAGCCAAAGAAAGCTCATCTGTTCTACATACCCTTCAGTTCTCAAATGTTACAAGATAGATTATATGTTCCTGACTCACACAATCATCGAAATCTGTTGAAATTTTTGAAAAATTACTTGGATTCAATTGTAGTGAAGTATCCTTTTTGGAACCGAACGGGAGGAGCTGACCATTTTGTTGTTGCTTGCCATGACTGGGCTCCTTCGGAAACGGAGAAACTTATGGTCAAAGGCATAAGGGCCCTTTGCAACTCTGATGTGAGGGAAGGTTTTGTCTTTGGAAAAGATGTTTCTCTCCCGGAAACATATGTGCGATTGCCTCGGAATCCTCTGAGAGATATTGGGGGAAATTCAGCTTCTCAAAGGCCAATCCTCGCTTTCTTCGCAGGCAATGATCATGGTTATCTCCGGCCGATTCTCCTTCGGCATTGGCAAAACAAAGATCCCAACATGAAAATTTACGGCCCCTTACCGAAAGGGAAGGGGATGAAGAACTATGGATGGCATATGAAGAACAGCAAGTATTGCATTTGTGCGAAAGGCTTTGAAGTTAACAGCCCTCGAGTTGTCGAAGCCATCTTCTTCGAATGCGTTCCCGTTATTATATCAGACAATTTCGTGCCTCCCTTTTTGGAAATTTTGAATTGGGAGTCTTTTGCTGTTTTTGTGATGGAAAAAGACATTCCAGATTTGAAGAAGATCCTCCTCTCCATTTCAGATCAGAGGTATAGAAAGATGCAGATGATGGTGAAGAAGGTACAACAGCATTTTCTCTGGCATTCCAGGCCTGTAAAGTATGATATATTTCATATGATACTTCACTCAGTTTGGGCCAATAGGCTTTATCAGATCATACCCAGATTGATCGAATGA 2043 41.12 MREILEMVQEFFSFCQVEKRRLPWLIGTMVAVILVFQYFELPYENVVSSLFSAGKGSFVGENRTHAAYSQFESSVSNNVASSTDMNSPFSQDIDGTSNNEGGGDGEFESEINRGLNKSLGSDEDDDYEASLPWDSVESSKNSTMDDLESSESESSLEDVGGKNQSLFQNKDSSHNVSIEIRTENDTKILEKESENNQRSYAGLASPSPAGQPMYASENTVSPTASAESNAFSKEKDDTTPHNKSEKSGKLPSDFILSANTFVADKESKVPPPPTGIYTISEMKKLFIKNRASFNPTVPLWSSAVDQQLLRAKTQIEQAPAIDNDPNLHPPLFRNFSMFRRSYELMEDNLKVYIYREGEKPIFHQGPIKGIYASEGWFMRLLEANKKFVTKKPKKAHLFYIPFSSQMLQDRLYVPDSHNHRNLLKFLKNYLDSIVVKYPFWNRTGGADHFVVACHDWAPSETEKLMVKGIRALCNSDVREGFVFGKDVSLPETYVRLPRNPLRDIGGNSASQRPILAFFAGNDHGYLRPILLRHWQNKDPNMKIYGPLPKGKGMKNYGWHMKNSKYCICAKGFEVNSPRVVEAIFFECVPVIISDNFVPPFLEILNWESFAVFVMEKDIPDLKKILLSISDQRYRKMQMMVKKVQQHFLWHSRPVKYDIFHMILHSVWANRLYQIIPRLIE 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35589119 35591764 - Bda000144.1 Bda13g01333 19464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01333 680 PANTHER EXOSTOSIN FAMILY PROTEIN 237 674 - -
Bda13g01333 680 MobiDBLite consensus disorder prediction 230 248 - -
Bda13g01333 680 MobiDBLite consensus disorder prediction 79 98 - -
Bda13g01333 680 MobiDBLite consensus disorder prediction 211 229 - -
Bda13g01333 680 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 237 674 IPR004263 GO:0006486|GO:0016757
Bda13g01333 680 MobiDBLite consensus disorder prediction 134 175 - -
Bda13g01333 680 MobiDBLite consensus disorder prediction 79 251 - -
Bda13g01333 680 MobiDBLite consensus disorder prediction 106 124 - -
Bda13g01333 680 MobiDBLite consensus disorder prediction 176 194 - -
Bda13g01333 680 Pfam Exostosin family 346 626 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01333 - - - qlo:115972161 741.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01133 Bda-Chr9:41993445 Bda13g01333 Bda-Chr13:35589119 1.08E-163 dispersed
Bda11g01702 Bda-Chr11:51257232 Bda13g01333 Bda-Chr13:35589119 1.45E-17 dispersed
Bda13g01333 Bda-Chr13:35589119 Bda14g01316 Bda-Chr14:14748963 2.78E-74 dispersed
Bda13g01333 Bda-Chr13:35589119 Bda02g00419 Bda-Chr2:44831100 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g294 Blo01g01393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1691 . . . . . . Blo17g00071 . . Bda13g01333 Bpe14g00515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008541 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 35