Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01336 ATGGCTTCTATTAGACGAACCTTGTCTCCAGTTCCTCGTCCTGGAGCTTCACTGAATGGAGAAGTGAGTTTAGGGTCTCCTTTATCCAAATCATCACCTTCTCCTCTATCCAAGTCATCATCTTTTCCTCAAAATCATTCTCCATCAAGTGGACTATCTTCTCTGCTGACTTCATTGGACACACATGCACTTTTTGGCAGCGTTTTGTTCTCGAGGCCGTCTAGGTTCCTCGAGAAGGCTAAACCAAAAGGCCAACTATGGAGAAGGATGCTTTTTCATTTCTTAATTTCTTTTACACTTGGTGTATTAATCGGGCTCACCCCGTTTGCTTCGACGAGTTTTTCCATGAATTTCGTGTCGAAGAGTCAAATTTTCCATTTTGAGGAGATATCAGGGGTTGAAAACTTCGATTTTCGCGATAATATTACAGGAAAGTTGGTCCATGTAGAGAATGAGACTTTGACAGCTAATGCTACTATTGCAGTGGACATGATACATAGCCACCATATTCTTCTAGATAATAATCAGTCGATTGTTGAAGATCCAAATCTCGAGCATCAAAAACTGTTGATTATTGTAACACCAACATCTGCCCATCCTTTTCAAGCCTATTATCTAAACCGTTTGGCACATACGATAAAACTTGTCGTGCCTCCAATATTGTGGATTGTTGTTGAAATGAATGCCCAATCTGATGAGACGGCTGATATCTTGAGGAAAAGTGGAGTTATGTATAGGCATCTTGTTTGCAGCGAAAATCTAACAGGCGTTGGGGATGAGAAAATTCATCAAAGAAATATTGCATTGTCTCACATCGAAACTCACCACCTAGACGGCATCATTTACTTTGCAGATGAGAGTAACGTTTACTTGGCTGATCTTCTTGAGCATATAAGGCAGATCAGGCGATTTGGAACATGGACAGTGGTGAAACTGAGTAAAAATAATGACAGAACTATAATAGAGGGGCCTATCTGTAATGGGACACAAGTAATAGGGTGGAAAATCGATGATATGAGAATGAGATTCCGCAGATTCCATGTTGAAATGTCGGGATTTGCTTTTAACAGTACGATACTCTGGGATCCGAAGAGGTGGCGCAGACCCACCATCAAACCTATTCGACAACTTGACTCCGTCAATGATGGGTTCCGTGTAAGTAGATTTATTGAACAAATTGTAGAGGATGAGAGTCAGATGGAAGGTCTACCGCCTGATTGTTCGAAAATCCTGGTTTGGAATCTTGATCTCAAGTCATCGAATCTGATCTATCCTAAGGAATGGATCATGGCGAATTAA 1299 41.03 MASIRRTLSPVPRPGASLNGEVSLGSPLSKSSPSPLSKSSSFPQNHSPSSGLSSLLTSLDTHALFGSVLFSRPSRFLEKAKPKGQLWRRMLFHFLISFTLGVLIGLTPFASTSFSMNFVSKSQIFHFEEISGVENFDFRDNITGKLVHVENETLTANATIAVDMIHSHHILLDNNQSIVEDPNLEHQKLLIIVTPTSAHPFQAYYLNRLAHTIKLVVPPILWIVVEMNAQSDETADILRKSGVMYRHLVCSENLTGVGDEKIHQRNIALSHIETHHLDGIIYFADESNVYLADLLEHIRQIRRFGTWTVVKLSKNNDRTIIEGPICNGTQVIGWKIDDMRMRFRRFHVEMSGFAFNSTILWDPKRWRRPTIKPIRQLDSVNDGFRVSRFIEQIVEDESQMEGLPPDCSKILVWNLDLKSSNLIYPKEWIMAN 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35635130 35636929 - Bda000147.1 Bda13g01336 19467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01336 432 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 187 429 IPR029044 -
Bda13g01336 432 CDD GlcAT-I 188 418 IPR005027 GO:0015018|GO:0016020
Bda13g01336 432 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 1 432 - -
Bda13g01336 432 SUPERFAMILY Nucleotide-diphospho-sugar transferases 189 430 IPR029044 -
Bda13g01336 432 MobiDBLite consensus disorder prediction 22 45 - -
Bda13g01336 432 Pfam Glycosyltransferase family 43 209 417 IPR005027 GO:0015018|GO:0016020
Bda13g01336 432 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 432 IPR005027 GO:0015018|GO:0016020
Bda13g01336 432 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01336 K20869 IRX9; putative beta-1,4-xylosyltransferase IRX9 [EC:2.4.2.-] - cit:102615799 501.901
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00933 Bda13g01336 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00189 Bda-Chr4:5978987 Bda13g01336 Bda-Chr13:35635130 3.07E-19 dispersed
Bda05g01240 Bda-Chr5:60297686 Bda13g01336 Bda-Chr13:35635130 8.92E-66 transposed
Bda01g00933 Bda-Chr1:42660768 Bda13g01336 Bda-Chr13:35635130 0 wgd
Bda11g00814 Bda-Chr11:8071905 Bda13g01336 Bda-Chr13:35635130 2.79E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g310 . . . . Bpe02g01178 . . . . . . . Car09g00564 . . . Cpe06g00471 . . . . . . . . . . . . . . . . Cone17ag1154 Cone20ag0574 . Csa03g04555 Chy04g00147 . Blo17g00075 . Bda01g00933 Bda13g01336 Bpe14g00511 . . . . . Cmo09g00620 Cma09g00638 . . . . . Bhi09g02586 . . . . . . . . . . . . . . . . Cme04g00173
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010529 2 4 2 2 2 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 32