Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01338 ATGGAGAGGCCAACTCAGATCAACGAAAACGTTGGCGATTTGGAGGAAAAAGATGAAAAAGGTTTGGTGATGAGGAGGAAACTGATAGGGTCGAGGCCTCCGAGCTGCGAGAAAAGGTGCAGAGACTGCGGACATTGTGAAGCAGTTCAGGTCCCCATTGTTCCTCAAGAATTTAAGAAGGAAAGAAGAAGACGAAGAAGGTCAAGAAGACGAAGAACAGAAATGCCAGTCATAGAATACTCGAGAGGAGACGATATCTCCAACTACAAACCATTGAGCTGGAAATGCAAGTGTGGAGATTTCATTTTCAATCCCTGA 318 44.97 MERPTQINENVGDLEEKDEKGLVMRRKLIGSRPPSCEKRCRDCGHCEAVQVPIVPQEFKKERRRRRRSRRRRTEMPVIEYSRGDDISNYKPLSWKCKCGDFIFNP 105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35667620 35667937 + Bda000149.1 Bda13g01338 19469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01338 105 PANTHER EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 2 14 105 - -
Bda13g01338 105 Pfam Epidermal patterning factor proteins 29 105 - -
Bda13g01338 105 PANTHER EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4 14 105 IPR039455 GO:0010374
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01338 - - - bvg:104905742 114.775
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01338 Bda-Chr13:35667620 Bda14g01300 Bda-Chr14:14377382 2.34E-25 dispersed
Bda13g01338 Bda-Chr13:35667620 Bda03g00440 Bda-Chr3:3793781 1.37E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g587 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0186 . . . . . Blo17g00077 Blo18g00089 . Bda13g01338 Bpe02g01175 Bpe14g00509 Bma01g01355 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001227 3 3 2 3 3 2 4 2 2 3 2 2 3 2 2 4 2 1 4 2 2 2 3 2 2 2 2 6 3 1 76