Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01346 ATGGGTACTGGCTGGCGAAGAGCATTTTGCACTACTATTTCTCGAGACCCAGAATCCGATGATTCAGAGAAGAACAAGAGAAGCTCTAGTCCTAACCCTAGTCCGAGAAGCTGCGTGAGATTACGCTTCTTCTCCAGTGGAAGCAACCCATCCACGCCACGCTCGCAGCTGTCTCCGCCACTCTCGAGTCCCAACTTGCGCTGTCGAACAAAGTCACACGAAGTCATTCAAACGCCAAATGCTACTGCTAAGACCCAGAGAATAGCTTTTGGCTCGAACCCTTCTTCTCCTCGATCTCCTCTCAAGCTGTCTCTTTTCAAAAGCAGCTTCAAGTTCAGAAGTAGCTGCGGAATCTGTCTGAACAGCGTGAAAACTGGTCAAGGGACAGCCATCTACACGGCGGAGTGCGCTCATGCCTTTCATTTTCCTTGCATAGCAGCTTATGTGGGAAAAAATAACACTCTCGTTTGCCCAGTTTGTAACATCACCTGGAAAGACGTACCGTTGCTCTCCGTCCACAGAAACGCCGTCTTTAAATCGACTGTAGACCCGGAAGAATTGGTTGTTTATCCGAACTTCGAAGAATCCAAAACAGAAGATAAAAAGATGATAGATTCTTCTCCAAGAGAGTGCAAATTGAACTGCAACCAAGTACAGCGGCAGCCAAATAATCAGACCTCCTACGATGACGACGAGCCTCTTTTGTCTCCGACCTCTGGTGGTCCGATAATCCCGATTCCGGAGGCTGACGAAGAGAATGTCGACGTGGAAGAGTTTCAGGGATTCTTCGTTAATCCCAACACTTATTGTTCTTCAATCAAATCAAATCGAGGCGAGTCAGAAATTAGGCCAAGGGAATTAAGGAGCAACGTACAAGTTAGATTTCTTCCGGAATCAGCTCTAATATCAACTTGCCATGGCAAAGAAACTCACGTCGTTGCTTTAGAAGTGAAAGCACCTCCGCCGCCTTCTTCTCGCAGCAGCGTAACCTCTCCACTTCTACAACCTTCGCACAGAGCCCCCATCGATTTAGTGACGGTGCTTGATGTAAGTGGAAGCATGAGTGGCGCTAAGTTGCTTATGCTGAAGCGCGCTATGCGCTTGGTGATATCATCTCTTTGCTCGTCAGATCGGCTTTCCATTGTCGCTTTCTGTTCTACTGCGAAGCGTTTATTGCCTCTGAAGAGGATGACCTTTTCTGGTAAGTCAGCGGCTACGAAAATAGTCGAGAGGCTCGTTTGTGGTCAGGGTACGAGCGTTGGGGAAGCCTTGAGAAAGGCTGCCAGAGTGCTGGAAGATCGAAGGGATAGGAATCCAGTTGCCAGTATAGTTCTTTTATCAGACGGTCAAGATGAAAGGGTCGATAACAAGGGAAGAAATCAACGGCGAGAGATGAGGTATACTCCGTCTTCCACTCGATTTGCTCATATTGAGATTCCTGTTCATGCGTTTGGGTTCGGCCAACATGGGCGGCGATACACAAACGAGCCGGCGGAGGAGGCTTTTGCAAAATGCATTGGTGTTTTATTGAGTGTTGTGGTTCAGGACCTAAGGATTCAGCTAAGTTTTCAATCCGGATCTTCTCCGGCGGAGATCTCCGCCATTTATTCCAGCAGTGGAAGACCCACCATCTGTAGCTCCGGTTCTGTGAGGCTCGGAGATTTGTATGCCGAGGAAGAGAGAGAGTTACTGGTGGAGCTAAAACTTCCATCATACGCCCTTGTCTCCAAACGCGTGATGTCCGTACAGTGCCTTTACAAAGACCCTTTGACGCAAGAGGTAGTTTACGGCAAAGAACAGGGCCTTCTCATACCTCGTCTCCACTCCGTTCGAACGTCCGAGCCGAAAGTCGAGCGCTTGAGACATTTATTCATCACCACTCGTGCCGTGGCGGAAGCTCGGAGAGCAATCGAGCACGACGACTATACGAGTGCCCACCACCTCCTGGCGTCGGCTCGCGCTCTCCTCGTGCAGTCGAGCTCCATCTCTACCGACGAATACATTCGACCTTTAGAAGCGGAGCTAGCAGAGCTTCAATGGCGAAGACAGCAAATTACGGCCCACCGGAGAAGAGGCACCGATGGGGACACACCAGGAAGTTTAGCGGAGCAAAACGATGATCAGTTAACGCCTACATCGGCTTGGAGAGCGGCTGAGAAGCTTGCTAAAGTAGCCATGATGAAGAAGTCGTTAACCAGTAGAGTCAGCGACTTACACGGCTTCGAAAACGCTAGATTTTAA 2241 49.44 MGTGWRRAFCTTISRDPESDDSEKNKRSSSPNPSPRSCVRLRFFSSGSNPSTPRSQLSPPLSSPNLRCRTKSHEVIQTPNATAKTQRIAFGSNPSSPRSPLKLSLFKSSFKFRSSCGICLNSVKTGQGTAIYTAECAHAFHFPCIAAYVGKNNTLVCPVCNITWKDVPLLSVHRNAVFKSTVDPEELVVYPNFEESKTEDKKMIDSSPRECKLNCNQVQRQPNNQTSYDDDEPLLSPTSGGPIIPIPEADEENVDVEEFQGFFVNPNTYCSSIKSNRGESEIRPRELRSNVQVRFLPESALISTCHGKETHVVALEVKAPPPPSSRSSVTSPLLQPSHRAPIDLVTVLDVSGSMSGAKLLMLKRAMRLVISSLCSSDRLSIVAFCSTAKRLLPLKRMTFSGKSAATKIVERLVCGQGTSVGEALRKAARVLEDRRDRNPVASIVLLSDGQDERVDNKGRNQRREMRYTPSSTRFAHIEIPVHAFGFGQHGRRYTNEPAEEAFAKCIGVLLSVVVQDLRIQLSFQSGSSPAEISAIYSSSGRPTICSSGSVRLGDLYAEEERELLVELKLPSYALVSKRVMSVQCLYKDPLTQEVVYGKEQGLLIPRLHSVRTSEPKVERLRHLFITTRAVAEARRAIEHDDYTSAHHLLASARALLVQSSSISTDEYIRPLEAELAELQWRRQQITAHRRRGTDGDTPGSLAEQNDDQLTPTSAWRAAEKLAKVAMMKKSLTSRVSDLHGFENARF 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35816846 35819171 - Bda000161.1 Bda13g01346 19477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01346 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 170 IPR013083 -
Bda13g01346 746 SMART VWA_4 341 527 IPR002035 -
Bda13g01346 746 MobiDBLite consensus disorder prediction 13 27 - -
Bda13g01346 746 CDD RING-H2 116 161 - -
Bda13g01346 746 MobiDBLite consensus disorder prediction 687 712 - -
Bda13g01346 746 Pfam von Willebrand factor type A domain 343 490 IPR002035 -
Bda13g01346 746 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 746 - -
Bda13g01346 746 CDD vWA_C3HC4_type 342 514 - -
Bda13g01346 746 SMART ring_2 116 160 IPR001841 -
Bda13g01346 746 MobiDBLite consensus disorder prediction 28 64 - -
Bda13g01346 746 ProSiteProfiles Zinc finger RING-type profile. 116 161 IPR001841 -
Bda13g01346 746 SUPERFAMILY RING/U-box 110 166 - -
Bda13g01346 746 ProSiteProfiles VWFA domain profile. 343 489 IPR002035 -
Bda13g01346 746 Pfam RING-like zinc finger 116 145 IPR001841 -
Bda13g01346 746 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 746 - -
Bda13g01346 746 MobiDBLite consensus disorder prediction 698 712 - -
Bda13g01346 746 SUPERFAMILY vWA-like 341 492 IPR036465 -
Bda13g01346 746 MobiDBLite consensus disorder prediction 1 64 - -
Bda13g01346 746 MobiDBLite consensus disorder prediction 221 240 - -
Bda13g01346 746 Gene3D von Willebrand factor, type A domain 343 507 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01346 - - - csv:101220853 848.195
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00923 Bda13g01346 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00752 Bda-Chr2:48273270 Bda13g01346 Bda-Chr13:35816846 4.60E-71 dispersed
Bda13g01346 Bda-Chr13:35816846 Bda14g01309 Bda-Chr14:14483331 1.45E-153 dispersed
Bda01g00923 Bda-Chr1:42460156 Bda13g01346 Bda-Chr13:35816846 0 wgd
Bda10g00036 Bda-Chr10:866134 Bda13g01346 Bda-Chr13:35816846 3.95E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66