Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01347 ATGACTCCACCGCTGCTTGGTGTGGGGGAGGAAAATGGGAGCAATGGCATCTTATTGACCTCCACAACTGGGATAGAAAGTGTAGGACGTAATAGCCCAGGACTCAAAGAGCACAACTATCTCGGATTATCTGATTGTTCTTCAGTGGACAGCTCAACCATTACCACTGGTTCTGATGAGAGCAAAACTGTTCTGAATCTGAAGGCTACAGAGCTTAGGCTAGGCCTTCCTGGGTCTTCTGCCATATGGTTGTTTCAGGAAAAATATCATGCTCATACTGAGGATAATGCGATGCTATCTCCGAGGCCGAACTCCAACTTGGGACTTAAATCTGGCTCAGTTCTTGACAGCCTCGGGGCTCATACTGGGATCGCGAAAGAGGTGATTTTACATAATAAAGTACAAGAAGGCTCTAATAACGCCAATGATGACAGACCGAACCAAAATGTTGCTACTATGACCAATAGCAGTGCACCTGCAACCAAGGCACAAGTTGTGGGGTGGCCACCTATAAGATCATTCAGGAAGAACTCCTTGACTACAGCTACAAAGAACAGCAATGAAGTTGATGGAAAAGCAGCAGCTGGCGCACTTTTTGTTAAAGTCTGCATGGATGGTGCTCCTTATCTGAGGAAGGTAGACTTGAGAAACTATTCTGCATACCAAGAGTTGTCTTCTGCCCTTGAGAAGATGTTTAGCTGTTTTACAATAGCAGGTCAATATGGGTCTCATGGAGGTCTGGGCAGGGAAATGATGAGTGAAAGCACGATAAAAGATCTTCTTCATGGGTCGGAATACGTTCTTACCTATGAGGATAAGGACAGTGACTGGATGCTTGTTGGTGATGTACCCTGGGAAATGTTCATTGAATCCTGTAAGAGGCTGAGGATTATGAAGAGCTCTGATGCCATTGGCCTGGGTAAGTATCTCATTCAAGCAGTGCCAGTGTTTTTAGTTGATAGTTTTTTTAATGCTGGATGA 981 44.85 MTPPLLGVGEENGSNGILLTSTTGIESVGRNSPGLKEHNYLGLSDCSSVDSSTITTGSDESKTVLNLKATELRLGLPGSSAIWLFQEKYHAHTEDNAMLSPRPNSNLGLKSGSVLDSLGAHTGIAKEVILHNKVQEGSNNANDDRPNQNVATMTNSSAPATKAQVVGWPPIRSFRKNSLTTATKNSNEVDGKAAAGALFVKVCMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIAGQYGSHGGLGREMMSESTIKDLLHGSEYVLTYEDKDSDWMLVGDVPWEMFIESCKRLRIMKSSDAIGLGKYLIQAVPVFLVDSFFNAG 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35829991 35831983 - Bda000162.1 Bda13g01347 19478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01347 326 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 80 IPR003311 GO:0005634|GO:0006355
Bda13g01347 326 ProSiteProfiles PB1 domain profile. 197 300 IPR000270 GO:0005515
Bda13g01347 326 SUPERFAMILY CAD & PB1 domains 195 299 - -
Bda13g01347 326 PANTHER AUXIN-RESPONSIVE PROTEIN 6 80 - -
Bda13g01347 326 Gene3D - 192 312 - -
Bda13g01347 326 MobiDBLite consensus disorder prediction 136 162 - -
Bda13g01347 326 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 87 309 IPR003311 GO:0005634|GO:0006355
Bda13g01347 326 Pfam AUX/IAA family 70 307 IPR033389 -
Bda13g01347 326 PANTHER AUXIN-RESPONSIVE PROTEIN 87 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01347 K14484 IAA; auxin-responsive protein IAA - pvy:116137674 389.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00575 Bda-Chr5:53652372 Bda13g01347 Bda-Chr13:35829991 1.58E-34 dispersed
Bda11g01543 Bda-Chr11:47932706 Bda13g01347 Bda-Chr13:35829991 1.19E-14 dispersed
Bda13g01347 Bda-Chr13:35829991 Bda05g00827 Bda-Chr5:56829495 3.92E-62 dispersed
Bda10g00037 Bda-Chr10:877997 Bda13g01347 Bda-Chr13:35829991 4.44E-113 wgd
Bda13g01347 Bda-Chr13:35829991 Bda04g00142 Bda-Chr4:3849608 6.18E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g561 . . . . . . . . Cmo05g00590 . . . . . . . . Bhi04g00902 Tan02g2510 . . Hepe10g0403 . Lcy13g1453 Cla08g01185 Cam08g1650 Cec08g1226 Cco08g1345 Clacu08g1346 . Cre08g1132 Cone6ag1502 Cone9ag1428 . . . . . Cme03g01778 Blo17g00086 . . Bda13g01347 . . . . . . . . Cma05g00564 Car05g00510 . Cpe11g00495 . . . . . . . . . . . . . . . Lsi08g01048 Csa02g02232 Chy03g01285 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000884 4 6 5 5 3 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 5 7 1 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16932 PF02309 AUX_IAA 2.60E-83 CL0072 Bda TR