Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01356 ATGAAAGGTGAATACGCGTCGCAGAAAAACGAAACCCATAATATCTTCTCTAAGCTTCAAAACCGCCATAGCCACCACAACCAACCGCAGCTTCAAACCCACCTGTTTTCCAATCCATTCCATCTCTCTGCCACCAGAGAATGCCATACCCCGGAAGAAGACGATAGTAGTCGCAGCACTGGACCACCGGCCGCCACAATAACTCAAACTAAATTACCCCTAGAGCTCAGCTCCGGTGACGGAGCTACTCTAGAGGTCGTAAGGCGCCCGAGGGGCCGCCCACCCGGTTCGAAGAACAAACCAAAAACGCCCGTTATTATAAACCGAGACCCAGAGCCCGCTATGAGCCCTTACATTCTTGAAGTCCCCGGCGGTAACGACGTAGTGGAAGCCATTGCCGACTTTTCTCGACGGAAAAATATGGGTCTCTGCGTCCTTAGTGCTTCCGGAACAGTGGCAAATGTAACTCTACGGCAACCATCGAGCCCCCCTGGAGCAACCGTTACCTTCCATGGCCGCTTCGAGATCTTATCGATTTCCGCCACCTTCCTACCTCATACTATGTCATATCCTGTCCCGAACGGCTTCACTATCTCTCTCTCAGGCCCTCAGGGTCAAATCATTGGCGGTTTAGTTATTGGGTCTCTCGTTGCAGTTGGGGCAGTGTACGTTATCGCGGCTTCTTTTAACAACCCTTCCTATCATCGGCTGCCGGACGAAGATGAGGTTAGAAACTCAGTTTCAGGCGGTGAAGGGCAATCTCCACCTGTTTCGTGCGGCGGAGAGAGTGGGGGGCACGCTCCGGTGGAGTCGTGTGTGATGCCCATGTATAGTTGCCACGTTCCCTCCGACGGTGTCTGGGCTCCTTCAGCCAGGCAACCGGCTCCGCTTCCACATGCACCATACCAGTAG 912 53.62 MKGEYASQKNETHNIFSKLQNRHSHHNQPQLQTHLFSNPFHLSATRECHTPEEDDSSRSTGPPAATITQTKLPLELSSGDGATLEVVRRPRGRPPGSKNKPKTPVIINRDPEPAMSPYILEVPGGNDVVEAIADFSRRKNMGLCVLSASGTVANVTLRQPSSPPGATVTFHGRFEILSISATFLPHTMSYPVPNGFTISLSGPQGQIIGGLVIGSLVAVGAVYVIAASFNNPSYHRLPDEDEVRNSVSGGEGQSPPVSCGGESGGHAPVESCVMPMYSCHVPSDGVWAPSARQPAPLPHAPYQ 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35930228 35931139 - Bda000172.1 Bda13g01356 19487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01356 303 ProSiteProfiles PPC domain profile profile. 112 250 IPR005175 -
Bda13g01356 303 MobiDBLite consensus disorder prediction 57 76 - -
Bda13g01356 303 Gene3D - 116 248 - -
Bda13g01356 303 MobiDBLite consensus disorder prediction 235 264 - -
Bda13g01356 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 231 IPR005175 -
Bda13g01356 303 MobiDBLite consensus disorder prediction 47 110 - -
Bda13g01356 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 296 IPR014476 GO:0003680
Bda13g01356 303 CDD DUF296 117 229 IPR005175 -
Bda13g01356 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 28 296 - -
Bda13g01356 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01356 Bda-Chr13:35930228 Bda07g00512 Bda-Chr7:6538506 2.95E-52 dispersed
Bda11g00797 Bda-Chr11:7938525 Bda13g01356 Bda-Chr13:35930228 2.41E-118 wgd
Bda13g01356 Bda-Chr13:35930228 Bda03g00458 Bda-Chr3:3960199 3.35E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01356 - - zju:107421268 399.053