Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01357 ATGGCTAGAGAGAAGATCAAGATCAAGAAGATTGATAACTTGACTGCTAGACAAGTCACTTTCTCTAAAAGAAGACGAGGGCTTCTCAAGAAAGCGCAGGAGCTCTCTGTTCTCTGCGATGCTGAAGTTGCTCTCATCATCTTCTCCGCTACTGGGAAGCTCTTTGAATATTCCAACACCAGCGTGAAAGATATACTTGCAAGGTACAGTTTGCACGCCAATAACCTGGGAAAACTGGATCAATCCTCCTTGGAGCTCCAGTTGATCGAGAATAGCAATCGCAATCGCTTCGGAATGAGCAAGGAAATTGCAGAAAAGGCTCACCAACTGAGGCAAATGAGAGGTGATGATCTTGAAGGATTAAAACTGGAAGAGTTGATGCAGCTAGAGAAATTGATCAATGCAGGTCTCACCCGTGTGATGGAGACTAAGGATGAACGGATCATGAGCGAGATACATGCACTTGAAATTAAGGAAACGCAGCTGATAGAAGAGAACAAGAAGCTGAAACAAATGCAGATGGCGATGGTGTCTCAAGGGAAGAAGCCTGTTCTCATGGAGGCAGACATTGCAATCCAAGAAGAAGGCGTGTCTTCCGAGCTGTCAGCGGCCAATGTTTGCAGCTGCAACAGTGGCCCTCCCATTGAGGACGATAGCTCTGATACCTCCCTCAAACTAGGGCTACCTTTTTCTAGCTAA 699 46.07 MAREKIKIKKIDNLTARQVTFSKRRRGLLKKAQELSVLCDAEVALIIFSATGKLFEYSNTSVKDILARYSLHANNLGKLDQSSLELQLIENSNRNRFGMSKEIAEKAHQLRQMRGDDLEGLKLEELMQLEKLINAGLTRVMETKDERIMSEIHALEIKETQLIEENKKLKQMQMAMVSQGKKPVLMEADIAIQEEGVSSELSAANVCSCNSGPPIEDDSSDTSLKLGLPFSS 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35968082 35978873 + Bda000174.1 Bda13g01357 19488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01357 232 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Bda13g01357 232 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Bda13g01357 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda13g01357 232 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Bda13g01357 232 Pfam K-box region 97 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda13g01357 232 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 226 - -
Bda13g01357 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Bda13g01357 232 Coils Coil 152 175 - -
Bda13g01357 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda13g01357 232 ProSiteProfiles K-box domain profile. 89 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda13g01357 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda13g01357 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda13g01357 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda13g01357 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda13g01357 232 MobiDBLite consensus disorder prediction 210 232 - -
Bda13g01357 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01357 Bda-Chr13:35968082 Bda15g00745 Bda-Chr15:10917908 8.35E-36 dispersed
Bda14g01325 Bda-Chr14:14924973 Bda13g01357 Bda-Chr13:35968082 1.78E-66 transposed
Bda15g00490 Bda-Chr15:8043975 Bda13g01357 Bda-Chr13:35968082 8.04E-40 transposed
Bda01g00911 Bda-Chr1:42144461 Bda13g01357 Bda-Chr13:35968082 1.87E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16933 PF01486 K-box 2.90E-12 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01357 - - tcc:18591803 304.293