Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g01357 | ATGGCTAGAGAGAAGATCAAGATCAAGAAGATTGATAACTTGACTGCTAGACAAGTCACTTTCTCTAAAAGAAGACGAGGGCTTCTCAAGAAAGCGCAGGAGCTCTCTGTTCTCTGCGATGCTGAAGTTGCTCTCATCATCTTCTCCGCTACTGGGAAGCTCTTTGAATATTCCAACACCAGCGTGAAAGATATACTTGCAAGGTACAGTTTGCACGCCAATAACCTGGGAAAACTGGATCAATCCTCCTTGGAGCTCCAGTTGATCGAGAATAGCAATCGCAATCGCTTCGGAATGAGCAAGGAAATTGCAGAAAAGGCTCACCAACTGAGGCAAATGAGAGGTGATGATCTTGAAGGATTAAAACTGGAAGAGTTGATGCAGCTAGAGAAATTGATCAATGCAGGTCTCACCCGTGTGATGGAGACTAAGGATGAACGGATCATGAGCGAGATACATGCACTTGAAATTAAGGAAACGCAGCTGATAGAAGAGAACAAGAAGCTGAAACAAATGCAGATGGCGATGGTGTCTCAAGGGAAGAAGCCTGTTCTCATGGAGGCAGACATTGCAATCCAAGAAGAAGGCGTGTCTTCCGAGCTGTCAGCGGCCAATGTTTGCAGCTGCAACAGTGGCCCTCCCATTGAGGACGATAGCTCTGATACCTCCCTCAAACTAGGGCTACCTTTTTCTAGCTAA | 699 | 46.07 | MAREKIKIKKIDNLTARQVTFSKRRRGLLKKAQELSVLCDAEVALIIFSATGKLFEYSNTSVKDILARYSLHANNLGKLDQSSLELQLIENSNRNRFGMSKEIAEKAHQLRQMRGDDLEGLKLEELMQLEKLINAGLTRVMETKDERIMSEIHALEIKETQLIEENKKLKQMQMAMVSQGKKPVLMEADIAIQEEGVSSELSAANVCSCNSGPPIEDDSSDTSLKLGLPFSS | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 35968082 | 35978873 | + | Bda000174.1 | Bda13g01357 | 19488 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g01357 | 232 | CDD | MADS_MEF2_like | 2 | 69 | IPR033896 | GO:0000977|GO:0045944 | |
Bda13g01357 | 232 | SUPERFAMILY | SRF-like | 3 | 72 | IPR036879 | GO:0003677|GO:0046983 | |
Bda13g01357 | 232 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g01357 | 232 | Gene3D | - | 13 | 82 | IPR036879 | GO:0003677|GO:0046983 | |
Bda13g01357 | 232 | Pfam | K-box region | 97 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda13g01357 | 232 | PANTHER | MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 | 1 | 226 | - | - | |
Bda13g01357 | 232 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 226 | - | - | |
Bda13g01357 | 232 | Coils | Coil | 152 | 175 | - | - | |
Bda13g01357 | 232 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g01357 | 232 | ProSiteProfiles | K-box domain profile. | 89 | 180 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda13g01357 | 232 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g01357 | 232 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g01357 | 232 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g01357 | 232 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bda13g01357 | 232 | MobiDBLite | consensus disorder prediction | 210 | 232 | - | - | |
Bda13g01357 | 232 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda13g01357 | Bda-Chr13:35968082 | Bda15g00745 | Bda-Chr15:10917908 | 8.35E-36 | dispersed | |
Bda14g01325 | Bda-Chr14:14924973 | Bda13g01357 | Bda-Chr13:35968082 | 1.78E-66 | transposed | |
Bda15g00490 | Bda-Chr15:8043975 | Bda13g01357 | Bda-Chr13:35968082 | 8.04E-40 | transposed | |
Bda01g00911 | Bda-Chr1:42144461 | Bda13g01357 | Bda-Chr13:35968082 | 1.87E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16933 | PF01486 | K-box | 2.90E-12 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g01357 | - | - | tcc:18591803 | 304.293 |