Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01358 AATTTGCAGAATAATTTAAACCAGGAGATCGTTCTTCATCCTGATTATATTGTATACCGTGATAATTATTGCACTGAGCCTCTATTAACTTTTTCACATAGTGGTATCAAAATCAACAGTTTTGCCACTCATGGAAACCTTGGGTTCTTCAACTTTGAATGGGCAGTTGATGATCTCATTAATATCGAATGTCAATGGTTCCGGAGTGTCGACACTGTCATGATTAAGCTTCGTGTCATATCAAAGGCTGCAGTTCAACCAGATATTGGATGTGACGCTTCAGGTGTCGATGAAATTAAGGTTGCTGTTGTTGACTCAAACTGGTCTGAGAAGCAGGGAAAAATCACGGCCCTGAATTTGAAATACATGGCTGTCTGGGATGGTTTGCTCGATGCAGACAGGGTAACTGATAGTGATTATCCACTTGAACAGAAGCATTATTTCCCCAAATTATATTATTTAAATTTCATGATATTTGACTGCAGTTTTGATGAGCTTTTTGAAGAGGTTGTCTATCCAAAAGGAGATTCAGATGCAGTTACCATTTGCAAACGAGATGTTGATCTTTTACAGCCAGAGACATTTGCTAATGATACAATAATTGACTTTTACATCAAGTACTTGAAGAATCAGATTGAAAGTGAGGAAAGGCATAAATTTCATTTTTTCAATAGTTTCTTCTTTAGAAAGATGGCAGACTTAGATAAAGATCCATCCAGTGCTTCTGATGGCAGAGCTGCTTTTTTACGAGTGAGAAAATGGACAAGGAAATTGGATTTGTTTAATAAGGATTTCATCTTCATTCCCATAAACTTCAATCTTCATTGGAGTTTAATCATCATATGCCATCCTGGCGAAATCGTGAAACACAATGATGAAGACTTGAAGAATTCTCTTAGAGCACCTTGTATATTACATATGGATTCTATTAAAGGAAGTCACGGGGTTATTAAAAGTCTTATTCAAAGTTATTTGTGTGAAGAATGGAAAGAAAGGCAAATGGAGACAGCGCAAGATTTCTCATCTAAATTCTACAGCCTCCGGTTTCTCCCTCTCGAGCTACCGCAGCAGGAAAATTTATTTGATTGTGGGTTGTTTTTGCTGCACTATCTAGAGCTTTTCCTAAAAGAGGCTCCTGTTAATTTCAATCCTTTCAAAATTTCAAAGTTCTCCAAGTTTCTTAATGTGAATTGGTTTCCGCCTAATGAAGCTTCTCTCAAGCGTGTTCTGATACAGAAGTTAATCTTCGAGTTGCTTGAAAACAGATCTCAAAACATGTCTTCTTTGGCTGACCGTGAGAGCCACGTGTCAAAATTGACAAGAACTAATGAGAATAAATCTGGGATGGAATGTCTTTCAGAGAGATGCAGCCCTGCTATAAAATGCGATGGGAGTGTATCCAAGTCCCAAACCGACGAAGGGATCGAAATTACAGTTATTTCAGCATCTTCACGAGACAACCTGCCTGTCAGCAACTCAGACCCAGTTGGCAGGGATTTATTTGAATCAGTGGCTTCTTCTGGATCTCTACTTGGACGGCAACTATCAGTTTCACAGTCATTATTGTACTTTCATTTTGATGGGGCTATGTCAAGAATACAGGAAGATGGGGAAGAAGAATGTGCAGAGCATTTTGGGCATTTACCATCAGAGATTGGCATAGAATCTCAAAGTTGTGATTTTCCATATTCATCGCAAGGTTATGATGCCAATGCTTCTTATGATGCCAATGCTTCTTATGATGCCAATGCTTCTTACGGCTTGCAAGACGAGCATGAGGATATCCGCTCATCAACCCCTGAAACATCAGCCTGTACTTCCAGTTCCAGCGATTCAGAGGACATTGGGATAATTGAACATTATCGAGCAGATAATATTCCAAGCCCTGGTCAGAAAGTAGGGATCCCTCCAGCAATTGACGACATAATTGAAAGCTCTCTAGAGACTGACACATTTCACGATGCCGTTGAAAGTCTCCCCTCCTCGCTATCTAAAGAAAATCCCGTCCTCTTGCCAAACGACGACTCAAAAAGAGTAATGGAAAACAATGAGAACGAATACAATATGGTTGTGGAATCATATGGACAAGAAGAACATCCTTCAAAGAAGCTCAGATTCACACCTTCTCTGGAAGATGAAGAGTGTGATAGCCAAAGACATTGA 2163 39.39 NLQNNLNQEIVLHPDYIVYRDNYCTEPLLTFSHSGIKINSFATHGNLGFFNFEWAVDDLINIECQWFRSVDTVMIKLRVISKAAVQPDIGCDASGVDEIKVAVVDSNWSEKQGKITALNLKYMAVWDGLLDADRVTDSDYPLEQKHYFPKLYYLNFMIFDCSFDELFEEVVYPKGDSDAVTICKRDVDLLQPETFANDTIIDFYIKYLKNQIESEERHKFHFFNSFFFRKMADLDKDPSSASDGRAAFLRVRKWTRKLDLFNKDFIFIPINFNLHWSLIIICHPGEIVKHNDEDLKNSLRAPCILHMDSIKGSHGVIKSLIQSYLCEEWKERQMETAQDFSSKFYSLRFLPLELPQQENLFDCGLFLLHYLELFLKEAPVNFNPFKISKFSKFLNVNWFPPNEASLKRVLIQKLIFELLENRSQNMSSLADRESHVSKLTRTNENKSGMECLSERCSPAIKCDGSVSKSQTDEGIEITVISASSRDNLPVSNSDPVGRDLFESVASSGSLLGRQLSVSQSLLYFHFDGAMSRIQEDGEEECAEHFGHLPSEIGIESQSCDFPYSSQGYDANASYDANASYDANASYGLQDEHEDIRSSTPETSACTSSSSDSEDIGIIEHYRADNIPSPGQKVGIPPAIDDIIESSLETDTFHDAVESLPSSLSKENPVLLPNDDSKRVMENNENEYNMVVESYGQEEHPSKKLRFTPSLEDEECDSQRH 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35982392 35992678 + Bda000175.1 Bda13g01358 19489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01358 720 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 5 668 - -
Bda13g01358 720 ProSiteProfiles Ubiquitin-like protease family profile. 180 374 IPR003653 GO:0006508|GO:0008234
Bda13g01358 720 MobiDBLite consensus disorder prediction 599 614 - -
Bda13g01358 720 SUPERFAMILY Cysteine proteinases 179 418 IPR038765 -
Bda13g01358 720 Gene3D - 172 416 - -
Bda13g01358 720 MobiDBLite consensus disorder prediction 696 720 - -
Bda13g01358 720 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 5 668 - -
Bda13g01358 720 Pfam Ulp1 protease family, C-terminal catalytic domain 196 392 IPR003653 GO:0006508|GO:0008234
Bda13g01358 720 MobiDBLite consensus disorder prediction 591 614 - -
Bda13g01358 720 Gene3D - 220 351 - -
Bda13g01358 720 MobiDBLite consensus disorder prediction 694 720 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01358 K08596 SENP7; sentrin-specific protease 7 [EC:3.4.22.68] - csv:101206097 683.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00290 Bda-Chr8:3045180 Bda13g01358 Bda-Chr13:35982392 2.51E-11 dispersed
Bda13g01358 Bda-Chr13:35982392 Bda14g01342 Bda-Chr14:15350850 2.38E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g511 . . . . . . . . . Cmo12g00152 . . . Car12g00180 . . Cpe07g00168 . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01358 Bpe02g01149 . . Bma02g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001964 1 5 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 4 2 2 2 2 2 2 2 2 1 3 5 1 65