Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01360 ATGCTATGGCGGCATATGGCATATCGTCATGCTTTGTCTGAGAAGTTGGAAGAGGAAGCGGAACCTCTGGAAGATGATAGTGACCTGGAATATGAATTGGAACCTTTACCAGCTGTGAGTAGTGAGTCTTTGAATGAGGTTGCTGCCTGTGTGAAGGTATTGATTTCTTCTGGCTTTCCAAAAGACTCGAGTGTCCCTAACAGTTCTACCGTTGAGGCTCCTCTAACTATAAATCTATCCTACAATCAATCAACTAGATTAGAAAATTCGGAACCTGCTTGTTCAACGCAAGGGACATATATTACCATTCCTGTTTCTGTTCAGAGACAGCCTGCCCCTGCACCTTCTTCTGTGGAAGGATTAGATGTAAACGTTACAAGTAACGGCATTATGCCTTCTCGAAGAAAAAGAAAACCTTGGTCAGAGGCAGAGGATTTGGAACTGATTGCAGCTGTTCAGAAGTGTGGTGAAGGAAATTGGGCTAATATCTTGCGTGGAGACTTCAAGGGTGATAGAACTGCTTCACAGCTATCTCAGAGATGGGCAATTATTAGGAAGCGTCACAGTAATTTGAATGTGGGAGGCAACTCTACAGGTACACAGCTATCTGAGGACCAAGTTGAAGCTGCTCGTCGTGCAATGTCATTAGCTCTTGATATGCCTGTTAATAATGTTAAAGCAATTTGCACAGGTAACTCAGGTAATCTATCTTCTCTAACTACCCCCTTTTTCATAACAGATAGTAATTGGAACAGAAGTAATATTTACTATGTTACAACATCTTACATTCAGCCGGTGCTGCTATGGATTGGTGCTACATTAGTCTGCAGTGCATTAGATCCATTAGTCCTACCTTCAGAAGCCAGCCAAGCAATTAAACAGAGACTTCTGAATTTTGTACGATCACTGTCAACAGTGCTTGCATTCGCCTATTGTTTGTCGAGCTTGATTCAACATGCGCAAAAGTTCTTCGTTGAGATCAATGACTCTAACGAGGCAAGAAATATGGGCTTCGATTTTGCTGGGAAAGCTGTTTATACTGCAGTATGGGTTGCTGCTTTATCACTGTTCATGGAGTTGCTTGGTTTCTCTACACAAAAGTGGCTAACTGCTGGGGGTCTCGGTACAGTATTACTCACCCTTGCTGGTCGTGAGATTTTTACAAATTTCCTTTCAAGCGTTATGATTCATGCTACCAGGCCATTTGTTCTGAATGAGTGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGTACAGTAGAGCATGTGGGTTGGTGGTCACCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATTCCAAATCACAAGTTCACTGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCTTATCTAGCCATCAGCCACTTTGACGTCAATAAGATCAATAATATTGTAGCTGATATGCGCAAAGTTATAGCAAAAAATCCCCAAGTTGAGCAGCAAAGGTTACACAGGAGAGTTTTTCTGGATTATATTGATCCTGAAAATCAAGCTCTCATGGTTCTGGTTTCATGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTGTGCGTAAAGGAAGCAATTCTCTTAGATCTTCTCAGAGTCATCAGCCATCATCGTGCACGGCTTGCTACTCCAATTCGTACAGTTCAGAAGATTTATAGAGAGGGTGACTTGGAAGAAGTAACTCTTGCCGATACCATATTCTCTCGTTCTACAGCAGCTAATGATCGTCCACTGCTACTCATTGAACCCTTGTATAAGATCAACAGTGATGACAAAAAGTCGTCTACTCGTTCCACGCGTTCAGACGACGAAAAGGACTCCAAACAAGAAGCAGCATCCACATCTAATATGAATGCCTCTGACAAAGCTGGATTGGCATCAAATTTTGATGGCAAAACAGATGATAAGATGAGAGGAAAAGAGGATGAGAACATGGAATACAAGTCCAATAACACTACCCCTTTAGGAGTGACATTGGAAAATCCCTCTCTTTTGCCAGAATCAGACAGTGAACAAATAGACAAGTCATCAGTTGGTTTCCGGACAAAGCACGATGGTGAAGCCTTTTCAGCATCGCCTGGAATATCAATGCCTCCATTGGAAGAGAACATACTTCTAGGTGTTGCTTTGGAAGGATCAAAAAGAACACTTCCAATTGAGGAAGAAATGTCTTCGCCTACAACACTTGAATCGAGAGAAATGTCTGCCCATCGTACTCCACTTTTGCAAATTAGCGAAGCTAAAGATGGTCAAATACCAACTGTTCCAAATGTGACAAAAAATGATTAA 2325 41.76 MLWRHMAYRHALSEKLEEEAEPLEDDSDLEYELEPLPAVSSESLNEVAACVKVLISSGFPKDSSVPNSSTVEAPLTINLSYNQSTRLENSEPACSTQGTYITIPVSVQRQPAPAPSSVEGLDVNVTSNGIMPSRRKRKPWSEAEDLELIAAVQKCGEGNWANILRGDFKGDRTASQLSQRWAIIRKRHSNLNVGGNSTGTQLSEDQVEAARRAMSLALDMPVNNVKAICTGNSGNLSSLTTPFFITDSNWNRSNIYYVTTSYIQPVLLWIGATLVCSALDPLVLPSEASQAIKQRLLNFVRSLSTVLAFAYCLSSLIQHAQKFFVEINDSNEARNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSYLAISHFDVNKINNIVADMRKVIAKNPQVEQQRLHRRVFLDYIDPENQALMVLVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYREGDLEEVTLADTIFSRSTAANDRPLLLIEPLYKINSDDKKSSTRSTRSDDEKDSKQEAASTSNMNASDKAGLASNFDGKTDDKMRGKEDENMEYKSNNTTPLGVTLENPSLLPESDSEQIDKSSVGFRTKHDGEAFSASPGISMPPLEENILLGVALEGSKRTLPIEEEMSSPTTLESREMSAHRTPLLQISEAKDGQIPTVPNVTKND 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36001522 36012560 - Bda000177.1 Bda13g01360 19491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01360 774 MobiDBLite consensus disorder prediction 640 659 - -
Bda13g01360 774 Gene3D - 402 457 IPR023408 -
Bda13g01360 774 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 246 663 - -
Bda13g01360 774 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 681 764 - -
Bda13g01360 774 MobiDBLite consensus disorder prediction 602 684 - -
Bda13g01360 774 MobiDBLite consensus disorder prediction 602 622 - -
Bda13g01360 774 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 189 IPR017930 -
Bda13g01360 774 MobiDBLite consensus disorder prediction 660 684 - -
Bda13g01360 774 Gene3D - 132 190 - -
Bda13g01360 774 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 681 764 IPR045042 -
Bda13g01360 774 ProSiteProfiles Myb-like domain profile. 132 181 IPR001005 -
Bda13g01360 774 MobiDBLite consensus disorder prediction 732 746 - -
Bda13g01360 774 Pfam Mechanosensitive ion channel 343 550 IPR006685 GO:0016020|GO:0055085
Bda13g01360 774 SUPERFAMILY Homeodomain-like 134 186 IPR009057 -
Bda13g01360 774 MobiDBLite consensus disorder prediction 111 138 - -
Bda13g01360 774 Pfam Myb-like DNA-binding domain 137 181 IPR001005 -
Bda13g01360 774 SMART sant 136 187 IPR001005 -
Bda13g01360 774 SUPERFAMILY Sm-like ribonucleoproteins 386 456 IPR010920 -
Bda13g01360 774 Gene3D - 300 400 - -
Bda13g01360 774 MobiDBLite consensus disorder prediction 729 774 - -
Bda13g01360 774 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 246 663 IPR045042 -
Bda13g01360 774 CDD SANT_TRF 138 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00254 Bda-Chr11:2971275 Bda13g01360 Bda-Chr13:36001522 1.13E-10 dispersed
Bda01g00910 Bda-Chr1:42107916 Bda13g01360 Bda-Chr13:36001522 0 transposed
Bda01g00909 Bda-Chr1:42082688 Bda13g01360 Bda-Chr13:36001522 7.51E-139 wgd
Bda13g01360 Bda-Chr13:36001522 Bda04g00117 Bda-Chr4:2654404 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16934 PF00924 MS_channel 2.60E-28 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01360 K22047 - csv:101213477 715.301