Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01360 ATGCTATGGCGGCATATGGCATATCGTCATGCTTTGTCTGAGAAGTTGGAAGAGGAAGCGGAACCTCTGGAAGATGATAGTGACCTGGAATATGAATTGGAACCTTTACCAGCTGTGAGTAGTGAGTCTTTGAATGAGGTTGCTGCCTGTGTGAAGGTATTGATTTCTTCTGGCTTTCCAAAAGACTCGAGTGTCCCTAACAGTTCTACCGTTGAGGCTCCTCTAACTATAAATCTATCCTACAATCAATCAACTAGATTAGAAAATTCGGAACCTGCTTGTTCAACGCAAGGGACATATATTACCATTCCTGTTTCTGTTCAGAGACAGCCTGCCCCTGCACCTTCTTCTGTGGAAGGATTAGATGTAAACGTTACAAGTAACGGCATTATGCCTTCTCGAAGAAAAAGAAAACCTTGGTCAGAGGCAGAGGATTTGGAACTGATTGCAGCTGTTCAGAAGTGTGGTGAAGGAAATTGGGCTAATATCTTGCGTGGAGACTTCAAGGGTGATAGAACTGCTTCACAGCTATCTCAGAGATGGGCAATTATTAGGAAGCGTCACAGTAATTTGAATGTGGGAGGCAACTCTACAGGTACACAGCTATCTGAGGACCAAGTTGAAGCTGCTCGTCGTGCAATGTCATTAGCTCTTGATATGCCTGTTAATAATGTTAAAGCAATTTGCACAGGTAACTCAGGTAATCTATCTTCTCTAACTACCCCCTTTTTCATAACAGATAGTAATTGGAACAGAAGTAATATTTACTATGTTACAACATCTTACATTCAGCCGGTGCTGCTATGGATTGGTGCTACATTAGTCTGCAGTGCATTAGATCCATTAGTCCTACCTTCAGAAGCCAGCCAAGCAATTAAACAGAGACTTCTGAATTTTGTACGATCACTGTCAACAGTGCTTGCATTCGCCTATTGTTTGTCGAGCTTGATTCAACATGCGCAAAAGTTCTTCGTTGAGATCAATGACTCTAACGAGGCAAGAAATATGGGCTTCGATTTTGCTGGGAAAGCTGTTTATACTGCAGTATGGGTTGCTGCTTTATCACTGTTCATGGAGTTGCTTGGTTTCTCTACACAAAAGTGGCTAACTGCTGGGGGTCTCGGTACAGTATTACTCACCCTTGCTGGTCGTGAGATTTTTACAAATTTCCTTTCAAGCGTTATGATTCATGCTACCAGGCCATTTGTTCTGAATGAGTGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGTACAGTAGAGCATGTGGGTTGGTGGTCACCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATTCCAAATCACAAGTTCACTGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCTTATCTAGCCATCAGCCACTTTGACGTCAATAAGATCAATAATATTGTAGCTGATATGCGCAAAGTTATAGCAAAAAATCCCCAAGTTGAGCAGCAAAGGTTACACAGGAGAGTTTTTCTGGATTATATTGATCCTGAAAATCAAGCTCTCATGGTTCTGGTTTCATGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTGTGCGTAAAGGAAGCAATTCTCTTAGATCTTCTCAGAGTCATCAGCCATCATCGTGCACGGCTTGCTACTCCAATTCGTACAGTTCAGAAGATTTATAGAGAGGGTGACTTGGAAGAAGTAACTCTTGCCGATACCATATTCTCTCGTTCTACAGCAGCTAATGATCGTCCACTGCTACTCATTGAACCCTTGTATAAGATCAACAGTGATGACAAAAAGTCGTCTACTCGTTCCACGCGTTCAGACGACGAAAAGGACTCCAAACAAGAAGCAGCATCCACATCTAATATGAATGCCTCTGACAAAGCTGGATTGGCATCAAATTTTGATGGCAAAACAGATGATAAGATGAGAGGAAAAGAGGATGAGAACATGGAATACAAGTCCAATAACACTACCCCTTTAGGAGTGACATTGGAAAATCCCTCTCTTTTGCCAGAATCAGACAGTGAACAAATAGACAAGTCATCAGTTGGTTTCCGGACAAAGCACGATGGTGAAGCCTTTTCAGCATCGCCTGGAATATCAATGCCTCCATTGGAAGAGAACATACTTCTAGGTGTTGCTTTGGAAGGATCAAAAAGAACACTTCCAATTGAGGAAGAAATGTCTTCGCCTACAACACTTGAATCGAGAGAAATGTCTGCCCATCGTACTCCACTTTTGCAAATTAGCGAAGCTAAAGATGGTCAAATACCAACTGTTCCAAATGTGACAAAAAATGATTAA 2325 41.76 MLWRHMAYRHALSEKLEEEAEPLEDDSDLEYELEPLPAVSSESLNEVAACVKVLISSGFPKDSSVPNSSTVEAPLTINLSYNQSTRLENSEPACSTQGTYITIPVSVQRQPAPAPSSVEGLDVNVTSNGIMPSRRKRKPWSEAEDLELIAAVQKCGEGNWANILRGDFKGDRTASQLSQRWAIIRKRHSNLNVGGNSTGTQLSEDQVEAARRAMSLALDMPVNNVKAICTGNSGNLSSLTTPFFITDSNWNRSNIYYVTTSYIQPVLLWIGATLVCSALDPLVLPSEASQAIKQRLLNFVRSLSTVLAFAYCLSSLIQHAQKFFVEINDSNEARNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSYLAISHFDVNKINNIVADMRKVIAKNPQVEQQRLHRRVFLDYIDPENQALMVLVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYREGDLEEVTLADTIFSRSTAANDRPLLLIEPLYKINSDDKKSSTRSTRSDDEKDSKQEAASTSNMNASDKAGLASNFDGKTDDKMRGKEDENMEYKSNNTTPLGVTLENPSLLPESDSEQIDKSSVGFRTKHDGEAFSASPGISMPPLEENILLGVALEGSKRTLPIEEEMSSPTTLESREMSAHRTPLLQISEAKDGQIPTVPNVTKND 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36001522 36012560 - Bda000177.1 Bda13g01360 19491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01360 774 MobiDBLite consensus disorder prediction 640 659 - -
Bda13g01360 774 Gene3D - 402 457 IPR023408 -
Bda13g01360 774 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 246 663 - -
Bda13g01360 774 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 681 764 - -
Bda13g01360 774 MobiDBLite consensus disorder prediction 602 684 - -
Bda13g01360 774 MobiDBLite consensus disorder prediction 602 622 - -
Bda13g01360 774 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 189 IPR017930 -
Bda13g01360 774 MobiDBLite consensus disorder prediction 660 684 - -
Bda13g01360 774 Gene3D - 132 190 - -
Bda13g01360 774 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 681 764 IPR045042 -
Bda13g01360 774 ProSiteProfiles Myb-like domain profile. 132 181 IPR001005 -
Bda13g01360 774 MobiDBLite consensus disorder prediction 732 746 - -
Bda13g01360 774 Pfam Mechanosensitive ion channel 343 550 IPR006685 GO:0016020|GO:0055085
Bda13g01360 774 SUPERFAMILY Homeodomain-like 134 186 IPR009057 -
Bda13g01360 774 MobiDBLite consensus disorder prediction 111 138 - -
Bda13g01360 774 Pfam Myb-like DNA-binding domain 137 181 IPR001005 -
Bda13g01360 774 SMART sant 136 187 IPR001005 -
Bda13g01360 774 SUPERFAMILY Sm-like ribonucleoproteins 386 456 IPR010920 -
Bda13g01360 774 Gene3D - 300 400 - -
Bda13g01360 774 MobiDBLite consensus disorder prediction 729 774 - -
Bda13g01360 774 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 246 663 IPR045042 -
Bda13g01360 774 CDD SANT_TRF 138 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01360 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 715.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00254 Bda-Chr11:2971275 Bda13g01360 Bda-Chr13:36001522 1.13E-10 dispersed
Bda01g00910 Bda-Chr1:42107916 Bda13g01360 Bda-Chr13:36001522 0 transposed
Bda01g00909 Bda-Chr1:42082688 Bda13g01360 Bda-Chr13:36001522 7.51E-139 wgd
Bda13g01360 Bda-Chr13:36001522 Bda04g00117 Bda-Chr4:2654404 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00254 . 1 535 Mechanosensitive Ion Channel Family AT4G00290 54.9 1.0e-149 526.9
Bda04g00117 . 1 605 Mechanosensitive Ion Channel Family AT5G10490 63.3 7.8e-201 697.2
Bda01g00910 . 16 621 Mechanosensitive Ion Channel Family AT5G10490 54.2 1.3e-174 610.1
Bda13g01360 . 247 763 Mechanosensitive Ion Channel Family AT5G10490 61.4 1.1e-167 587.0
Bda01g00910 . 1 617 Mechanosensitive Ion Channel Family AT1G58200 55.3 6.3e-182 634.4
Bda04g00117 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 59.0 4.4e-175 611.7
Bda13g01360 . 247 746 Mechanosensitive Ion Channel Family AT1G58200 59.9 4.5e-156 548.5
Bda06g00468 . 63 923 Mechanosensitive Ion Channel Family AT1G53470 54.9 1.7e-248 855.9
Bda14g00631 . 1 821 Mechanosensitive Ion Channel Family AT1G53470 55.4 8.3e-243 837.0
Bda06g00468 . 63 925 Mechanosensitive Ion Channel Family AT3G14810 53.2 1.9e-236 815.8
Bda14g00631 . 2 827 Mechanosensitive Ion Channel Family AT3G14810 52.7 3.0e-226 781.9
Bda06g00468 . 63 924 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.2e-280 961.8
Bda14g00631 . 10 826 Mechanosensitive Ion Channel Family AT1G78610 57.5 5.6e-260 894.0
Bda06g00468 . 221 920 Mechanosensitive Ion Channel Family AT2G17000 58.9 5.7e-225 777.7
Bda14g00631 . 142 820 Mechanosensitive Ion Channel Family AT2G17000 58.5 8.2e-224 773.9
Bda14g00631 . 116 566 Mechanosensitive Ion Channel Family AT2G17010 60.8 1.0e-144 510.8
Bda03g00130 . 55 776 Mechanosensitive Ion Channel Family AT5G19520 51.4 2.3e-193 672.5
Bda03g00130 . 61 776 Mechanosensitive Ion Channel Family AT5G12080 56.0 1.0e-214 743.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021307 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16934 PF00924 MS_channel 2.60E-28 No_clan Bda TF