Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g01360 | ATGCTATGGCGGCATATGGCATATCGTCATGCTTTGTCTGAGAAGTTGGAAGAGGAAGCGGAACCTCTGGAAGATGATAGTGACCTGGAATATGAATTGGAACCTTTACCAGCTGTGAGTAGTGAGTCTTTGAATGAGGTTGCTGCCTGTGTGAAGGTATTGATTTCTTCTGGCTTTCCAAAAGACTCGAGTGTCCCTAACAGTTCTACCGTTGAGGCTCCTCTAACTATAAATCTATCCTACAATCAATCAACTAGATTAGAAAATTCGGAACCTGCTTGTTCAACGCAAGGGACATATATTACCATTCCTGTTTCTGTTCAGAGACAGCCTGCCCCTGCACCTTCTTCTGTGGAAGGATTAGATGTAAACGTTACAAGTAACGGCATTATGCCTTCTCGAAGAAAAAGAAAACCTTGGTCAGAGGCAGAGGATTTGGAACTGATTGCAGCTGTTCAGAAGTGTGGTGAAGGAAATTGGGCTAATATCTTGCGTGGAGACTTCAAGGGTGATAGAACTGCTTCACAGCTATCTCAGAGATGGGCAATTATTAGGAAGCGTCACAGTAATTTGAATGTGGGAGGCAACTCTACAGGTACACAGCTATCTGAGGACCAAGTTGAAGCTGCTCGTCGTGCAATGTCATTAGCTCTTGATATGCCTGTTAATAATGTTAAAGCAATTTGCACAGGTAACTCAGGTAATCTATCTTCTCTAACTACCCCCTTTTTCATAACAGATAGTAATTGGAACAGAAGTAATATTTACTATGTTACAACATCTTACATTCAGCCGGTGCTGCTATGGATTGGTGCTACATTAGTCTGCAGTGCATTAGATCCATTAGTCCTACCTTCAGAAGCCAGCCAAGCAATTAAACAGAGACTTCTGAATTTTGTACGATCACTGTCAACAGTGCTTGCATTCGCCTATTGTTTGTCGAGCTTGATTCAACATGCGCAAAAGTTCTTCGTTGAGATCAATGACTCTAACGAGGCAAGAAATATGGGCTTCGATTTTGCTGGGAAAGCTGTTTATACTGCAGTATGGGTTGCTGCTTTATCACTGTTCATGGAGTTGCTTGGTTTCTCTACACAAAAGTGGCTAACTGCTGGGGGTCTCGGTACAGTATTACTCACCCTTGCTGGTCGTGAGATTTTTACAAATTTCCTTTCAAGCGTTATGATTCATGCTACCAGGCCATTTGTTCTGAATGAGTGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGTACAGTAGAGCATGTGGGTTGGTGGTCACCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATTCCAAATCACAAGTTCACTGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCTTATCTAGCCATCAGCCACTTTGACGTCAATAAGATCAATAATATTGTAGCTGATATGCGCAAAGTTATAGCAAAAAATCCCCAAGTTGAGCAGCAAAGGTTACACAGGAGAGTTTTTCTGGATTATATTGATCCTGAAAATCAAGCTCTCATGGTTCTGGTTTCATGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTGTGCGTAAAGGAAGCAATTCTCTTAGATCTTCTCAGAGTCATCAGCCATCATCGTGCACGGCTTGCTACTCCAATTCGTACAGTTCAGAAGATTTATAGAGAGGGTGACTTGGAAGAAGTAACTCTTGCCGATACCATATTCTCTCGTTCTACAGCAGCTAATGATCGTCCACTGCTACTCATTGAACCCTTGTATAAGATCAACAGTGATGACAAAAAGTCGTCTACTCGTTCCACGCGTTCAGACGACGAAAAGGACTCCAAACAAGAAGCAGCATCCACATCTAATATGAATGCCTCTGACAAAGCTGGATTGGCATCAAATTTTGATGGCAAAACAGATGATAAGATGAGAGGAAAAGAGGATGAGAACATGGAATACAAGTCCAATAACACTACCCCTTTAGGAGTGACATTGGAAAATCCCTCTCTTTTGCCAGAATCAGACAGTGAACAAATAGACAAGTCATCAGTTGGTTTCCGGACAAAGCACGATGGTGAAGCCTTTTCAGCATCGCCTGGAATATCAATGCCTCCATTGGAAGAGAACATACTTCTAGGTGTTGCTTTGGAAGGATCAAAAAGAACACTTCCAATTGAGGAAGAAATGTCTTCGCCTACAACACTTGAATCGAGAGAAATGTCTGCCCATCGTACTCCACTTTTGCAAATTAGCGAAGCTAAAGATGGTCAAATACCAACTGTTCCAAATGTGACAAAAAATGATTAA | 2325 | 41.76 | MLWRHMAYRHALSEKLEEEAEPLEDDSDLEYELEPLPAVSSESLNEVAACVKVLISSGFPKDSSVPNSSTVEAPLTINLSYNQSTRLENSEPACSTQGTYITIPVSVQRQPAPAPSSVEGLDVNVTSNGIMPSRRKRKPWSEAEDLELIAAVQKCGEGNWANILRGDFKGDRTASQLSQRWAIIRKRHSNLNVGGNSTGTQLSEDQVEAARRAMSLALDMPVNNVKAICTGNSGNLSSLTTPFFITDSNWNRSNIYYVTTSYIQPVLLWIGATLVCSALDPLVLPSEASQAIKQRLLNFVRSLSTVLAFAYCLSSLIQHAQKFFVEINDSNEARNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSYLAISHFDVNKINNIVADMRKVIAKNPQVEQQRLHRRVFLDYIDPENQALMVLVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYREGDLEEVTLADTIFSRSTAANDRPLLLIEPLYKINSDDKKSSTRSTRSDDEKDSKQEAASTSNMNASDKAGLASNFDGKTDDKMRGKEDENMEYKSNNTTPLGVTLENPSLLPESDSEQIDKSSVGFRTKHDGEAFSASPGISMPPLEENILLGVALEGSKRTLPIEEEMSSPTTLESREMSAHRTPLLQISEAKDGQIPTVPNVTKND | 774 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 36001522 | 36012560 | - | Bda000177.1 | Bda13g01360 | 19491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g01360 | 774 | MobiDBLite | consensus disorder prediction | 640 | 659 | - | - | |
Bda13g01360 | 774 | Gene3D | - | 402 | 457 | IPR023408 | - | |
Bda13g01360 | 774 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 246 | 663 | - | - | |
Bda13g01360 | 774 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 681 | 764 | - | - | |
Bda13g01360 | 774 | MobiDBLite | consensus disorder prediction | 602 | 684 | - | - | |
Bda13g01360 | 774 | MobiDBLite | consensus disorder prediction | 602 | 622 | - | - | |
Bda13g01360 | 774 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 134 | 189 | IPR017930 | - | |
Bda13g01360 | 774 | MobiDBLite | consensus disorder prediction | 660 | 684 | - | - | |
Bda13g01360 | 774 | Gene3D | - | 132 | 190 | - | - | |
Bda13g01360 | 774 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 681 | 764 | IPR045042 | - | |
Bda13g01360 | 774 | ProSiteProfiles | Myb-like domain profile. | 132 | 181 | IPR001005 | - | |
Bda13g01360 | 774 | MobiDBLite | consensus disorder prediction | 732 | 746 | - | - | |
Bda13g01360 | 774 | Pfam | Mechanosensitive ion channel | 343 | 550 | IPR006685 | GO:0016020|GO:0055085 | |
Bda13g01360 | 774 | SUPERFAMILY | Homeodomain-like | 134 | 186 | IPR009057 | - | |
Bda13g01360 | 774 | MobiDBLite | consensus disorder prediction | 111 | 138 | - | - | |
Bda13g01360 | 774 | Pfam | Myb-like DNA-binding domain | 137 | 181 | IPR001005 | - | |
Bda13g01360 | 774 | SMART | sant | 136 | 187 | IPR001005 | - | |
Bda13g01360 | 774 | SUPERFAMILY | Sm-like ribonucleoproteins | 386 | 456 | IPR010920 | - | |
Bda13g01360 | 774 | Gene3D | - | 300 | 400 | - | - | |
Bda13g01360 | 774 | MobiDBLite | consensus disorder prediction | 729 | 774 | - | - | |
Bda13g01360 | 774 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 246 | 663 | IPR045042 | - | |
Bda13g01360 | 774 | CDD | SANT_TRF | 138 | 186 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g00254 | Bda-Chr11:2971275 | Bda13g01360 | Bda-Chr13:36001522 | 1.13E-10 | dispersed | |
Bda01g00910 | Bda-Chr1:42107916 | Bda13g01360 | Bda-Chr13:36001522 | 0 | transposed | |
Bda01g00909 | Bda-Chr1:42082688 | Bda13g01360 | Bda-Chr13:36001522 | 7.51E-139 | wgd | |
Bda13g01360 | Bda-Chr13:36001522 | Bda04g00117 | Bda-Chr4:2654404 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16934 | PF00924 | MS_channel | 2.60E-28 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g01360 | K22047 | - | csv:101213477 | 715.301 |