Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01362 ATGGCGGCTGCGAATCCTCAGCCTCTGCAGAGCCGTCCCTTCGACGACCATGTACGTGGTCTTATAACGATTGGAGAGGAAGACGACGACTACGAAGATGGAAGTGGCGATGCTCTGGATGATGTCCAGGATGCTCATATGAATTCGGTTAGCGTCGTTAACCATGGTGGATTACAGGTTGCGTCAAGGACTAGCGAACTTACGCTCTCTTTTGAAGGCGAGGTCTATGTCTTCCCCGCCGTAACGCCTGAAAAGGTGCAGGCAGTGCTTTTGCTTTTGGGGGGTCGTGATTTGCCAAGTGGTATGCCCGCGGTTGAAGTACCTTATGATCAAAGTAACAGGGGAGTTATGGACCCTCCAAAACGCTCAAATCTGTCACGAAGAATAGCTTCCCTGGTTAGGTTTCGAGAAAAGCGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATACTGTTCGAAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGTCAGTTTGCATCATTGAAAGAAAATTCGGGTGCTTCAAGTTGGGATTCTGCAGAGAATGGCCTACAAGATGGTATTCGTTCAGAAACTGTTCTTAGGAGATGTCAGCATTGTGGTGTTAATGAAAGTAATACTCCTGCAATGCGCCGCGGTCCGGCTGGACCAAGGACATTATGCAATGCATGTGGTCTGATGTGGGCAAATAAAGGTACTTTGAGAGATCTCAGCAAGGGTGGAAGGAGTATTTCTGTTGAACCTGAATCATCAATGGATATCAAGCCTTCTATAACAGAACCAGAAGTTTCTGATTACCAGGATGATCGTGGACCAGAGGATCCTGGCAAGTCTGTAACAGAAGGTTCTAGTAATCCTTCTGTCCACCAACATCATGAAAATTTGCACGAAGATCTTATGGACTCTTTGCCCAAGCAAATGGACCATTCTTCAGGGAATGATGATGAGCAGGAACCGGAACCATTGGGTGAACATGGTAATACTATGGATACAGAGTTGGATATCCCTGCTAACTTGGTTTAG 1029 46.16 MAAANPQPLQSRPFDDHVRGLITIGEEDDDYEDGSGDALDDVQDAHMNSVSVVNHGGLQVASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDLPSGMPAVEVPYDQSNRGVMDPPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKENSGASSWDSAENGLQDGIRSETVLRRCQHCGVNESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSISVEPESSMDIKPSITEPEVSDYQDDRGPEDPGKSVTEGSSNPSVHQHHENLHEDLMDSLPKQMDHSSGNDDEQEPEPLGEHGNTMDTELDIPANLV 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36128240 36131844 + Bda000181.1 Bda13g01362 19493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01362 342 ProSiteProfiles CCT domain profile. 128 170 IPR010402 GO:0005515
Bda13g01362 342 CDD ZnF_GATA 198 245 IPR000679 GO:0006355|GO:0043565
Bda13g01362 342 Pfam tify domain 63 94 IPR010399 -
Bda13g01362 342 MobiDBLite consensus disorder prediction 165 184 - -
Bda13g01362 342 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
Bda13g01362 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 246 - -
Bda13g01362 342 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Bda13g01362 342 MobiDBLite consensus disorder prediction 292 329 - -
Bda13g01362 342 Pfam CCT motif 128 169 IPR010402 GO:0005515
Bda13g01362 342 ProSiteProfiles GATA-type zinc finger domain profile. 193 249 IPR000679 GO:0006355|GO:0043565
Bda13g01362 342 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 341 - -
Bda13g01362 342 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Bda13g01362 342 MobiDBLite consensus disorder prediction 264 278 - -
Bda13g01362 342 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Bda13g01362 342 Gene3D - 191 249 IPR013088 GO:0006355|GO:0008270
Bda13g01362 342 MobiDBLite consensus disorder prediction 167 184 - -
Bda13g01362 342 PANTHER GATA TRANSCRIPTION FACTOR 28 1 341 IPR045280 GO:0006355
Bda13g01362 342 SMART tify_2 60 95 IPR010399 -
Bda13g01362 342 MobiDBLite consensus disorder prediction 237 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00806 Bda-Chr11:7985592 Bda13g01362 Bda-Chr13:36128240 1.90E-71 dispersed
Bda11g00807 Bda-Chr11:7991287 Bda13g01362 Bda-Chr13:36128240 3.47E-144 dispersed
Bda13g01362 Bda-Chr13:36128240 Bda08g00019 Bda-Chr8:179909 3.00E-08 dispersed
Bda13g01362 Bda-Chr13:36128240 Bda03g00450 Bda-Chr3:3847408 2.99E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16935 PF06203 CCT 1.30E-13 CL0281 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01362 - - mcha:111004894 495.738