Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g01362 | ATGGCGGCTGCGAATCCTCAGCCTCTGCAGAGCCGTCCCTTCGACGACCATGTACGTGGTCTTATAACGATTGGAGAGGAAGACGACGACTACGAAGATGGAAGTGGCGATGCTCTGGATGATGTCCAGGATGCTCATATGAATTCGGTTAGCGTCGTTAACCATGGTGGATTACAGGTTGCGTCAAGGACTAGCGAACTTACGCTCTCTTTTGAAGGCGAGGTCTATGTCTTCCCCGCCGTAACGCCTGAAAAGGTGCAGGCAGTGCTTTTGCTTTTGGGGGGTCGTGATTTGCCAAGTGGTATGCCCGCGGTTGAAGTACCTTATGATCAAAGTAACAGGGGAGTTATGGACCCTCCAAAACGCTCAAATCTGTCACGAAGAATAGCTTCCCTGGTTAGGTTTCGAGAAAAGCGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATACTGTTCGAAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGTCAGTTTGCATCATTGAAAGAAAATTCGGGTGCTTCAAGTTGGGATTCTGCAGAGAATGGCCTACAAGATGGTATTCGTTCAGAAACTGTTCTTAGGAGATGTCAGCATTGTGGTGTTAATGAAAGTAATACTCCTGCAATGCGCCGCGGTCCGGCTGGACCAAGGACATTATGCAATGCATGTGGTCTGATGTGGGCAAATAAAGGTACTTTGAGAGATCTCAGCAAGGGTGGAAGGAGTATTTCTGTTGAACCTGAATCATCAATGGATATCAAGCCTTCTATAACAGAACCAGAAGTTTCTGATTACCAGGATGATCGTGGACCAGAGGATCCTGGCAAGTCTGTAACAGAAGGTTCTAGTAATCCTTCTGTCCACCAACATCATGAAAATTTGCACGAAGATCTTATGGACTCTTTGCCCAAGCAAATGGACCATTCTTCAGGGAATGATGATGAGCAGGAACCGGAACCATTGGGTGAACATGGTAATACTATGGATACAGAGTTGGATATCCCTGCTAACTTGGTTTAG | 1029 | 46.16 | MAAANPQPLQSRPFDDHVRGLITIGEEDDDYEDGSGDALDDVQDAHMNSVSVVNHGGLQVASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDLPSGMPAVEVPYDQSNRGVMDPPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKENSGASSWDSAENGLQDGIRSETVLRRCQHCGVNESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSISVEPESSMDIKPSITEPEVSDYQDDRGPEDPGKSVTEGSSNPSVHQHHENLHEDLMDSLPKQMDHSSGNDDEQEPEPLGEHGNTMDTELDIPANLV | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 36128240 | 36131844 | + | Bda000181.1 | Bda13g01362 | 19493 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g01362 | 342 | ProSiteProfiles | CCT domain profile. | 128 | 170 | IPR010402 | GO:0005515 | |
Bda13g01362 | 342 | CDD | ZnF_GATA | 198 | 245 | IPR000679 | GO:0006355|GO:0043565 | |
Bda13g01362 | 342 | Pfam | tify domain | 63 | 94 | IPR010399 | - | |
Bda13g01362 | 342 | MobiDBLite | consensus disorder prediction | 165 | 184 | - | - | |
Bda13g01362 | 342 | ProSiteProfiles | Tify domain profile. | 60 | 95 | IPR010399 | - | |
Bda13g01362 | 342 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 194 | 246 | - | - | |
Bda13g01362 | 342 | Pfam | GATA zinc finger | 199 | 235 | IPR000679 | GO:0006355|GO:0043565 | |
Bda13g01362 | 342 | MobiDBLite | consensus disorder prediction | 292 | 329 | - | - | |
Bda13g01362 | 342 | Pfam | CCT motif | 128 | 169 | IPR010402 | GO:0005515 | |
Bda13g01362 | 342 | ProSiteProfiles | GATA-type zinc finger domain profile. | 193 | 249 | IPR000679 | GO:0006355|GO:0043565 | |
Bda13g01362 | 342 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 1 | 341 | - | - | |
Bda13g01362 | 342 | SMART | GATA_3 | 193 | 246 | IPR000679 | GO:0006355|GO:0043565 | |
Bda13g01362 | 342 | MobiDBLite | consensus disorder prediction | 264 | 278 | - | - | |
Bda13g01362 | 342 | ProSitePatterns | GATA-type zinc finger domain. | 199 | 226 | IPR000679 | GO:0006355|GO:0043565 | |
Bda13g01362 | 342 | Gene3D | - | 191 | 249 | IPR013088 | GO:0006355|GO:0008270 | |
Bda13g01362 | 342 | MobiDBLite | consensus disorder prediction | 167 | 184 | - | - | |
Bda13g01362 | 342 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 1 | 341 | IPR045280 | GO:0006355 | |
Bda13g01362 | 342 | SMART | tify_2 | 60 | 95 | IPR010399 | - | |
Bda13g01362 | 342 | MobiDBLite | consensus disorder prediction | 237 | 342 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g00806 | Bda-Chr11:7985592 | Bda13g01362 | Bda-Chr13:36128240 | 1.90E-71 | dispersed | |
Bda11g00807 | Bda-Chr11:7991287 | Bda13g01362 | Bda-Chr13:36128240 | 3.47E-144 | dispersed | |
Bda13g01362 | Bda-Chr13:36128240 | Bda08g00019 | Bda-Chr8:179909 | 3.00E-08 | dispersed | |
Bda13g01362 | Bda-Chr13:36128240 | Bda03g00450 | Bda-Chr3:3847408 | 2.99E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16935 | PF06203 | CCT | 1.30E-13 | CL0281 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g01362 | - | - | mcha:111004894 | 495.738 |