Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01362 ATGGCGGCTGCGAATCCTCAGCCTCTGCAGAGCCGTCCCTTCGACGACCATGTACGTGGTCTTATAACGATTGGAGAGGAAGACGACGACTACGAAGATGGAAGTGGCGATGCTCTGGATGATGTCCAGGATGCTCATATGAATTCGGTTAGCGTCGTTAACCATGGTGGATTACAGGTTGCGTCAAGGACTAGCGAACTTACGCTCTCTTTTGAAGGCGAGGTCTATGTCTTCCCCGCCGTAACGCCTGAAAAGGTGCAGGCAGTGCTTTTGCTTTTGGGGGGTCGTGATTTGCCAAGTGGTATGCCCGCGGTTGAAGTACCTTATGATCAAAGTAACAGGGGAGTTATGGACCCTCCAAAACGCTCAAATCTGTCACGAAGAATAGCTTCCCTGGTTAGGTTTCGAGAAAAGCGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATACTGTTCGAAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGTCAGTTTGCATCATTGAAAGAAAATTCGGGTGCTTCAAGTTGGGATTCTGCAGAGAATGGCCTACAAGATGGTATTCGTTCAGAAACTGTTCTTAGGAGATGTCAGCATTGTGGTGTTAATGAAAGTAATACTCCTGCAATGCGCCGCGGTCCGGCTGGACCAAGGACATTATGCAATGCATGTGGTCTGATGTGGGCAAATAAAGGTACTTTGAGAGATCTCAGCAAGGGTGGAAGGAGTATTTCTGTTGAACCTGAATCATCAATGGATATCAAGCCTTCTATAACAGAACCAGAAGTTTCTGATTACCAGGATGATCGTGGACCAGAGGATCCTGGCAAGTCTGTAACAGAAGGTTCTAGTAATCCTTCTGTCCACCAACATCATGAAAATTTGCACGAAGATCTTATGGACTCTTTGCCCAAGCAAATGGACCATTCTTCAGGGAATGATGATGAGCAGGAACCGGAACCATTGGGTGAACATGGTAATACTATGGATACAGAGTTGGATATCCCTGCTAACTTGGTTTAG 1029 46.16 MAAANPQPLQSRPFDDHVRGLITIGEEDDDYEDGSGDALDDVQDAHMNSVSVVNHGGLQVASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDLPSGMPAVEVPYDQSNRGVMDPPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKENSGASSWDSAENGLQDGIRSETVLRRCQHCGVNESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSISVEPESSMDIKPSITEPEVSDYQDDRGPEDPGKSVTEGSSNPSVHQHHENLHEDLMDSLPKQMDHSSGNDDEQEPEPLGEHGNTMDTELDIPANLV 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36128240 36131844 + Bda000181.1 Bda13g01362 19493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01362 342 ProSiteProfiles CCT domain profile. 128 170 IPR010402 GO:0005515
Bda13g01362 342 CDD ZnF_GATA 198 245 IPR000679 GO:0006355|GO:0043565
Bda13g01362 342 Pfam tify domain 63 94 IPR010399 -
Bda13g01362 342 MobiDBLite consensus disorder prediction 165 184 - -
Bda13g01362 342 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
Bda13g01362 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 246 - -
Bda13g01362 342 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Bda13g01362 342 MobiDBLite consensus disorder prediction 292 329 - -
Bda13g01362 342 Pfam CCT motif 128 169 IPR010402 GO:0005515
Bda13g01362 342 ProSiteProfiles GATA-type zinc finger domain profile. 193 249 IPR000679 GO:0006355|GO:0043565
Bda13g01362 342 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 341 - -
Bda13g01362 342 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Bda13g01362 342 MobiDBLite consensus disorder prediction 264 278 - -
Bda13g01362 342 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Bda13g01362 342 Gene3D - 191 249 IPR013088 GO:0006355|GO:0008270
Bda13g01362 342 MobiDBLite consensus disorder prediction 167 184 - -
Bda13g01362 342 PANTHER GATA TRANSCRIPTION FACTOR 28 1 341 IPR045280 GO:0006355
Bda13g01362 342 SMART tify_2 60 95 IPR010399 -
Bda13g01362 342 MobiDBLite consensus disorder prediction 237 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01362 - - - mcha:111004894 495.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00806 Bda-Chr11:7985592 Bda13g01362 Bda-Chr13:36128240 1.90E-71 dispersed
Bda11g00807 Bda-Chr11:7991287 Bda13g01362 Bda-Chr13:36128240 3.47E-144 dispersed
Bda13g01362 Bda-Chr13:36128240 Bda08g00019 Bda-Chr8:179909 3.00E-08 dispersed
Bda13g01362 Bda-Chr13:36128240 Bda03g00450 Bda-Chr3:3847408 2.99E-72 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00806 CCT 16 264 Tify Gene Family AT4G24470 53.3 1.8e-62 236.5
Bda03g00450 CCT 65 264 Tify Gene Family AT4G24470 62.6 5.7e-61 231.5
Bda06g01129 . 76 285 Tify Gene Family AT4G24470 51.5 2.5e-48 189.5
Bda06g01129 . 89 279 Tify Gene Family AT1G51600 62.4 1.3e-57 220.3
Bda13g01362 . 25 241 Tify Gene Family AT1G51600 53.0 2.3e-51 199.5
Bda03g00450 CCT 46 249 Tify Gene Family AT1G51600 54.7 7.4e-50 194.5
Bda11g00807 . 68 246 Tify Gene Family AT1G51600 60.8 1.5e-47 186.8
Bda11g00806 CCT 16 264 Tify Gene Family AT4G24470 53.3 1.8e-62 236.5
Bda03g00450 CCT 65 264 Tify Gene Family AT4G24470 62.6 5.7e-61 231.5
Bda06g01129 . 76 285 Tify Gene Family AT4G24470 51.5 2.5e-48 189.5
Bda06g01129 . 89 279 Tify Gene Family AT1G51600 62.4 1.3e-57 220.3
Bda13g01362 . 25 241 Tify Gene Family AT1G51600 53.0 2.3e-51 199.5
Bda03g00450 CCT 46 249 Tify Gene Family AT1G51600 54.7 7.4e-50 194.5
Bda11g00807 . 68 246 Tify Gene Family AT1G51600 60.8 1.5e-47 186.8
Bda11g00596 CCT 1 174 Tify Gene Family AT4G14713 51.6 1.2e-41 166.8
Bda08g00254 CCT 1 184 Tify Gene Family AT4G14720 53.1 9.5e-43 171.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16935 PF06203 CCT 1.30E-13 CL0281 Bda TF