Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda13g01366 | ATGGCCATAGCAGACGACAGGCAACGACACATGCCTCTCCCTGACGATCGCTTGCCGTCAAGAGGCCAAGCTCTTGCCTATCCAGAGGCTGTTCTTCTTCTCAATCCCGTGGAGCCTGAGTTTAAAGGAGAGGTGGACGATAAGTACCAGTATTCTTGTGACAACAAAGATCTTCGAGTTCATGGTTGGATATCCACAGACCCACCGGTCGGATTTTGGCAAATCACGGCCAGTGATGAGTTCCGGTCTGGAGGACCCGTCAAACAGAATCTGACGTCACATGTCGGCCCGACCACCCTCGCCATGTTTCTCAGCGCTCACTATTCGGGATTAGATTTGGTGCCCAAATTTGGGTCAGGAGAGAGTTGGAAGAAAGTTTTTGGCCCTGTTTTTATCTACCTAAACTCTGTTTTCAACGGTGACTACCCATTTCTGCTCTGGGATGATGCCAAATTACAGATGATGATGGAAGTACAGAGCTGGCCGTATTCCTTCGTGTCGTCGGAGGACTTTCCGGCGTCGGACCAGAGGGGTAATCTCAGAGGCAGGCTACTTATCCTAGACAGGTACATTAGCGGCGACTGTATTGCAGCAAATGGTGCTTACGTTGGCCTAGCTCCTCCAGGAGATGCTGGTTCTTGGCAAAGAGAATGCAAGGAGTATCAATTTTGGACGAGAGCGGATGAACAAGGTTTCTTTTCAATAATGGAAGTACGGGCCGGAGTTTATAAACTATATGCATGGGTTCCTGGCTTCATCGGAGATTACGCATACGACGTCGCCGTTGATGTTACGCCGGGATGTGAGATTGAGATGGGTGAAGTTGTATATGAACCCCCAAGAGACGGCCCCACATTATGGGAAATTGGCGTTCCTGATCGATCAGCCGCAGAATTCTATGTCCCTGATCCAAATCCCATGTACATAAATAAGTTGTACATAAACCACCCTCAAAGATTCAGACAGTATGGGCTGTGGGAAAGATACGCAGAGCTTTACCCAGATGGAGACTTGGTCTATACTGTTGGCGTCAGTGATTACTCTAAAGACTGGTTTTTTGCGCAAGTTCCAAGGAAGAAAGGGAACAATTCATTTCAAGGTACGACCTGGCAAATCAAGTTCGAGTTAGAGGAAGTAGATTCGAATGCAACTTATAAACTCAGACTGGCTCTGGCTTCTGCAACTATGGCTGAATTACAGGTTCGAGTGAATGATTCATCGGCAAGTTCTGCTCTATTTTCGAGTGGAATAATAGGAAGAGATAACTCCATAGCCAGACATGGAGTTCATGGGCTGTACTGGCTTTTCAACGTGGAAATAGGAGGAGAGATGCTTGTTGAAGGTGATAACACAATATTTTTGACACAGCCAAGAAGTAGCAGCCCTTTCCAAGGGATTATGTATGATTATATTCGCTTAGAAGGTCCTAAAATCTCCTGA | 1440 | 46.81 | MAIADDRQRHMPLPDDRLPSRGQALAYPEAVLLLNPVEPEFKGEVDDKYQYSCDNKDLRVHGWISTDPPVGFWQITASDEFRSGGPVKQNLTSHVGPTTLAMFLSAHYSGLDLVPKFGSGESWKKVFGPVFIYLNSVFNGDYPFLLWDDAKLQMMMEVQSWPYSFVSSEDFPASDQRGNLRGRLLILDRYISGDCIAANGAYVGLAPPGDAGSWQRECKEYQFWTRADEQGFFSIMEVRAGVYKLYAWVPGFIGDYAYDVAVDVTPGCEIEMGEVVYEPPRDGPTLWEIGVPDRSAAEFYVPDPNPMYINKLYINHPQRFRQYGLWERYAELYPDGDLVYTVGVSDYSKDWFFAQVPRKKGNNSFQGTTWQIKFELEEVDSNATYKLRLALASATMAELQVRVNDSSASSALFSSGIIGRDNSIARHGVHGLYWLFNVEIGGEMLVEGDNTIFLTQPRSSSPFQGIMYDYIRLEGPKIS | 479 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 36211623 | 36214023 | - | Bda000185.1 | Bda13g01366 | 19497 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda13g01366 | 479 | SUPERFAMILY | Starch-binding domain-like | 200 | 268 | IPR013784 | GO:0030246 | |
| Bda13g01366 | 479 | Gene3D | - | 283 | 474 | - | - | |
| Bda13g01366 | 479 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Bda13g01366 | 479 | CDD | RGL4_C | 287 | 474 | - | - | |
| Bda13g01366 | 479 | Pfam | Polysaccharide lyase family 4, domain III | 285 | 473 | IPR029411 | - | |
| Bda13g01366 | 479 | Pfam | Rhamnogalacturonate lyase family | 1 | 45 | IPR010325 | - | |
| Bda13g01366 | 479 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 478 | - | - | |
| Bda13g01366 | 479 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Bda13g01366 | 479 | SUPERFAMILY | Galactose-binding domain-like | 282 | 474 | IPR008979 | - | |
| Bda13g01366 | 479 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 478 | - | - | |
| Bda13g01366 | 479 | Pfam | Polysaccharide lyase family 4, domain II | 199 | 270 | IPR029413 | - | |
| Bda13g01366 | 479 | Gene3D | - | 35 | 119 | IPR014718 | GO:0030246 | |
| Bda13g01366 | 479 | CDD | RGL4_N | 15 | 136 | - | - | |
| Bda13g01366 | 479 | CDD | RGL4_M | 176 | 273 | IPR029413 | - | |
| Bda13g01366 | 479 | Gene3D | - | 188 | 272 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g00449 | Bda-Chr3:3844312 | Bda13g01366 | Bda-Chr13:36211623 | 4.05E-51 | dispersed | |
| Bda13g01366 | Bda-Chr13:36211623 | Bda13g01367 | Bda-Chr13:36229677 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda13g01366 | K18195 | - | cit:102606842 | 812.757 |