Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01366 ATGGCCATAGCAGACGACAGGCAACGACACATGCCTCTCCCTGACGATCGCTTGCCGTCAAGAGGCCAAGCTCTTGCCTATCCAGAGGCTGTTCTTCTTCTCAATCCCGTGGAGCCTGAGTTTAAAGGAGAGGTGGACGATAAGTACCAGTATTCTTGTGACAACAAAGATCTTCGAGTTCATGGTTGGATATCCACAGACCCACCGGTCGGATTTTGGCAAATCACGGCCAGTGATGAGTTCCGGTCTGGAGGACCCGTCAAACAGAATCTGACGTCACATGTCGGCCCGACCACCCTCGCCATGTTTCTCAGCGCTCACTATTCGGGATTAGATTTGGTGCCCAAATTTGGGTCAGGAGAGAGTTGGAAGAAAGTTTTTGGCCCTGTTTTTATCTACCTAAACTCTGTTTTCAACGGTGACTACCCATTTCTGCTCTGGGATGATGCCAAATTACAGATGATGATGGAAGTACAGAGCTGGCCGTATTCCTTCGTGTCGTCGGAGGACTTTCCGGCGTCGGACCAGAGGGGTAATCTCAGAGGCAGGCTACTTATCCTAGACAGGTACATTAGCGGCGACTGTATTGCAGCAAATGGTGCTTACGTTGGCCTAGCTCCTCCAGGAGATGCTGGTTCTTGGCAAAGAGAATGCAAGGAGTATCAATTTTGGACGAGAGCGGATGAACAAGGTTTCTTTTCAATAATGGAAGTACGGGCCGGAGTTTATAAACTATATGCATGGGTTCCTGGCTTCATCGGAGATTACGCATACGACGTCGCCGTTGATGTTACGCCGGGATGTGAGATTGAGATGGGTGAAGTTGTATATGAACCCCCAAGAGACGGCCCCACATTATGGGAAATTGGCGTTCCTGATCGATCAGCCGCAGAATTCTATGTCCCTGATCCAAATCCCATGTACATAAATAAGTTGTACATAAACCACCCTCAAAGATTCAGACAGTATGGGCTGTGGGAAAGATACGCAGAGCTTTACCCAGATGGAGACTTGGTCTATACTGTTGGCGTCAGTGATTACTCTAAAGACTGGTTTTTTGCGCAAGTTCCAAGGAAGAAAGGGAACAATTCATTTCAAGGTACGACCTGGCAAATCAAGTTCGAGTTAGAGGAAGTAGATTCGAATGCAACTTATAAACTCAGACTGGCTCTGGCTTCTGCAACTATGGCTGAATTACAGGTTCGAGTGAATGATTCATCGGCAAGTTCTGCTCTATTTTCGAGTGGAATAATAGGAAGAGATAACTCCATAGCCAGACATGGAGTTCATGGGCTGTACTGGCTTTTCAACGTGGAAATAGGAGGAGAGATGCTTGTTGAAGGTGATAACACAATATTTTTGACACAGCCAAGAAGTAGCAGCCCTTTCCAAGGGATTATGTATGATTATATTCGCTTAGAAGGTCCTAAAATCTCCTGA 1440 46.81 MAIADDRQRHMPLPDDRLPSRGQALAYPEAVLLLNPVEPEFKGEVDDKYQYSCDNKDLRVHGWISTDPPVGFWQITASDEFRSGGPVKQNLTSHVGPTTLAMFLSAHYSGLDLVPKFGSGESWKKVFGPVFIYLNSVFNGDYPFLLWDDAKLQMMMEVQSWPYSFVSSEDFPASDQRGNLRGRLLILDRYISGDCIAANGAYVGLAPPGDAGSWQRECKEYQFWTRADEQGFFSIMEVRAGVYKLYAWVPGFIGDYAYDVAVDVTPGCEIEMGEVVYEPPRDGPTLWEIGVPDRSAAEFYVPDPNPMYINKLYINHPQRFRQYGLWERYAELYPDGDLVYTVGVSDYSKDWFFAQVPRKKGNNSFQGTTWQIKFELEEVDSNATYKLRLALASATMAELQVRVNDSSASSALFSSGIIGRDNSIARHGVHGLYWLFNVEIGGEMLVEGDNTIFLTQPRSSSPFQGIMYDYIRLEGPKIS 479
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 36211623 36214023 - Bda000185.1 Bda13g01366 19497
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01366 479 SUPERFAMILY Starch-binding domain-like 200 268 IPR013784 GO:0030246
Bda13g01366 479 Gene3D - 283 474 - -
Bda13g01366 479 MobiDBLite consensus disorder prediction 1 20 - -
Bda13g01366 479 CDD RGL4_C 287 474 - -
Bda13g01366 479 Pfam Polysaccharide lyase family 4, domain III 285 473 IPR029411 -
Bda13g01366 479 Pfam Rhamnogalacturonate lyase family 1 45 IPR010325 -
Bda13g01366 479 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 478 - -
Bda13g01366 479 MobiDBLite consensus disorder prediction 1 16 - -
Bda13g01366 479 SUPERFAMILY Galactose-binding domain-like 282 474 IPR008979 -
Bda13g01366 479 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 478 - -
Bda13g01366 479 Pfam Polysaccharide lyase family 4, domain II 199 270 IPR029413 -
Bda13g01366 479 Gene3D - 35 119 IPR014718 GO:0030246
Bda13g01366 479 CDD RGL4_N 15 136 - -
Bda13g01366 479 CDD RGL4_M 176 273 IPR029413 -
Bda13g01366 479 Gene3D - 188 272 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00449 Bda-Chr3:3844312 Bda13g01366 Bda-Chr13:36211623 4.05E-51 dispersed
Bda13g01366 Bda-Chr13:36211623 Bda13g01367 Bda-Chr13:36229677 0 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01366 K18195 - cit:102606842 812.757