Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01367 ATGGATAATGGCATCGTCCAAGTGACACTATCGAACCCAGATGGAATTGTCACTGGGATTAGATTTAATGGGATTGACAACCTGCTGGAAGTTCTTAACGACGAATCAAATAGAGGGTATTTCCTGCAATTACTAACCCGATATATGATCAAGGGGACAGATTTCAAAATTATAGTGCAGAATGAAGAACAGGTGGAGCTGTCTTTCACAAGATCATGGGATGTCTCTCTTGAGGGCAAGCTCGTACCTTTAAACATTGATAAAAGGTTCATTATGCTCAGGGGTTCTTCTGGGTTTTACTCCTACGCCATTTATGAACACTTGAAAGAATGGCCTGGTTTCAATCTAGATGAAACCAGAATCGCATTCAAACTCAGAAAAGACAAGTTTCATTATATGGCCATAGCAGACGACAGGCAACGACACATGCCTCTCCCTGACGATCGCTTGCCGTCAAGAGGCCAAGCTCTTGCCTATCCAGAGGCTGTTCTTCTTCTCAATCCCGTGGAGCCTGAGTTTAAAGGAGAGGTGGACGATAAGTACCAGTATGCTTGTGACAACAAAGATCTTCGAGTTCATGGTTGGATATCCACAGACCCACCGGTCGGATTTTGGCAAATCACGGCCAGTGATGAGTTCCGGTCTGGAGGACCCGTCAAACAGAATCTGACGTCACATGTCGGCCCGACCACCCTCGCCATGTTTCTCAGCGCTCACTATTCGGGATTAGATTTGGTGCCCAAATTTGGGTCAGGAGAGAGTTGGAAGAAAGTTTTTGGCCCTGTTTTTATCTACCTAAACTCTGTTTTCAACGGTGACGACCCATTTCTGCTCTGGGATGATGCCAAATTACAGATGATGATGGAAGTACAGAGCTGGCCGTATTCCTTCGTGTCGTCGGAGGACTTTCCGGCGTCGGACCAGAGGGGTAATCTCAGAGGCAGGCTACTTATCCTAGACAGGTACATTAGCGGCGACTGTATTGCAGCAAATGGTGCTTACGTTGGCCTAGCTCCTCCAGGAGATGCTGGTTCTTGGCAAAGAGAATGCAAGGAGTATCAATTTTGGACGAGAGCGGATGAAGAAGGTTTCTTTTCAATAATGGAAGTACGGGCCGGAGTTTATAAACTATATGCATGGGTTCCTGGGTTCATCGGAGATTATGCATACGACGTCGCCGTTGATGTTACGCCGGGATGTGAGATTGAGATGGGCGAAGTTGTCTATGAACCCCCAAGAGACGGCCCCACATTATGGGAAATAGGCGTTCCTGATCGATCAGCCGCAGAATTCTACGTCCCTGATCCAAATCCCATGTACATAAATAAGTTGTACATAAACCACCCTCAAAGGTTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGCCATTGCCGAAGATTCAGACAGTATGGGCTGTGGGAAAGATACGCAGAGCTTTACCCAGATGGAGACTTGGTCTATACTGTTGGCGTCAGTGATTACTCTAAAGACTGGTTTTTTGCGCAAGTTCCAAGGAAGAAAGGGGACAATTCATTTCAAGGTACGACCTGGCAAATCAAGTTCGAGTTAGAAGAAGTAGATTCGAATGCAACTTATAAACTCAGACTGGCTCTGGCTTCTGCAACTATGGCTGAATTACAGGTTCGAGTGAATGATTCATCGGCAAGTTCTGCTCTATTTTCGAGTGGAATAATAGGAAGAGATAACTCCATAGCCAGACATGGAGTTCATGGGCTGTACTGGCTTTTCAACGTGGAAATAGGAGGAGAGATGCTTGTTGAAGGTGATAACACAATATTTTTGACACAGCCAAGAAGTAGCAGCCCTTTCCAAGGGATTATGTATGATTATATTCGCTTAGAAGTTCAATTGAGTACACATAGCCTTCTGCATACTCCTCTAAAATTTAGAAGTAAAACGGGTATCTCAATCAGATACGATAGAAATGGGCGTACCATGAAATCTGACAATCTCATGAACATAAAGTCGAGCATATTGGTCCATCGTATAAGTAGTCTTCACAAGGAGAAAATATGCCGATTTGGTCAATCAATCAACTATAACCCAAATAAAGTCGTGATCTTTAAGTGTCTTAGGAAGTCCCACCACAAAGTCCATAGTGATATGCTCTCACTTCCACTGAGGTACCATAAGTGGTTGCAATGTACCAGTGGGTCGTTGATACTCCGCTTTGACTTGCTGACAAGTGAGACATTTTTCGACAAATTTAGATACATCCACCTTCAATCCACGCCACCAATAATGTTGTTTCAAGTCTCGATATATTTTGGGTTTCGCTGTGGTCGGAGGTTTGGGTTGGCGGTGTTTTTCTTCCGACGAGATAATTTCTCTCTGTTTTTTTTTCTTCTTCTTGGTCTTTCTCTAGTTTTCAGAACGAGAGAGATTGGTGAGATTTTATTCTCACCAATCATCCAATTTAAAGGAGATTTCTCCTTTAATTTTGGTAGGTCGTTAGTTGATTCTATGACGGAAGCACTGGAAACCCAAGTAAAGAGCAAGGTCTCCATTAAGGGTCACCTCCACACATACCGATTCTGTGACAACGTGTGGACCTTTATCTTGCAAGACGCATTGTTCAAGAACGAAGAATGCCAGGAGAATGTTGGCAGAGTCAAAATAGTGGCATGTGATTCCAAGTTACTAACACAGTAA 2673 43.92 MDNGIVQVTLSNPDGIVTGIRFNGIDNLLEVLNDESNRGYFLQLLTRYMIKGTDFKIIVQNEEQVELSFTRSWDVSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPGFNLDETRIAFKLRKDKFHYMAIADDRQRHMPLPDDRLPSRGQALAYPEAVLLLNPVEPEFKGEVDDKYQYACDNKDLRVHGWISTDPPVGFWQITASDEFRSGGPVKQNLTSHVGPTTLAMFLSAHYSGLDLVPKFGSGESWKKVFGPVFIYLNSVFNGDDPFLLWDDAKLQMMMEVQSWPYSFVSSEDFPASDQRGNLRGRLLILDRYISGDCIAANGAYVGLAPPGDAGSWQRECKEYQFWTRADEEGFFSIMEVRAGVYKLYAWVPGFIGDYAYDVAVDVTPGCEIEMGEVVYEPPRDGPTLWEIGVPDRSAAEFYVPDPNPMYINKLYINHPQRFLLLLLLLLRRHCRRFRQYGLWERYAELYPDGDLVYTVGVSDYSKDWFFAQVPRKKGDNSFQGTTWQIKFELEEVDSNATYKLRLALASATMAELQVRVNDSSASSALFSSGIIGRDNSIARHGVHGLYWLFNVEIGGEMLVEGDNTIFLTQPRSSSPFQGIMYDYIRLEVQLSTHSLLHTPLKFRSKTGISIRYDRNGRTMKSDNLMNIKSSILVHRISSLHKEKICRFGQSINYNPNKVVIFKCLRKSHHKVHSDMLSLPLRYHKWLQCTSGSLILRFDLLTSETFFDKFRYIHLQSTPPIMLFQVSIYFGFRCGRRFGLAVFFFRRDNFSLFFFLLLGLSLVFRTREIGEILFSPIIQFKGDFSFNFGRSLVDSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEECQENVGRVKIVACDSKLLTQ 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36229677 36244768 - Bda000186.3 Bda13g01367 19498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01367 890 Gene3D - 415 621 - -
Bda13g01367 890 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 622 - -
Bda13g01367 890 SUPERFAMILY Starch-binding domain-like 351 400 IPR013784 GO:0030246
Bda13g01367 890 CDD RGL4_C 419 621 - -
Bda13g01367 890 Pfam Transcription initiation factor IIA, gamma subunit 844 885 IPR015871 GO:0005672|GO:0006367
Bda13g01367 890 CDD RGL4_M 308 405 IPR029413 -
Bda13g01367 890 Gene3D - 322 404 - -
Bda13g01367 890 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 836 886 IPR009088 GO:0005672|GO:0006367
Bda13g01367 890 Gene3D - 839 889 IPR009088 GO:0005672|GO:0006367
Bda13g01367 890 CDD TFIIA_gamma_C 841 886 IPR015871 GO:0005672|GO:0006367
Bda13g01367 890 SUPERFAMILY Galactose-binding domain-like 414 621 IPR008979 -
Bda13g01367 890 Pfam Rhamnogalacturonate lyase family 1 177 IPR010325 -
Bda13g01367 890 Pfam Polysaccharide lyase family 4, domain III 417 620 IPR029411 -
Bda13g01367 890 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 622 - -
Bda13g01367 890 CDD RGL4_N 1 275 - -
Bda13g01367 890 Gene3D - 2 250 IPR014718 GO:0030246
Bda13g01367 890 Pfam Polysaccharide lyase family 4, domain II 331 402 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00904 Bda-Chr1:42028552 Bda13g01367 Bda-Chr13:36229677 6.22E-38 dispersed
Bda03g00448 Bda-Chr3:3841403 Bda13g01367 Bda-Chr13:36229677 8.82E-72 dispersed
Bda09g01614 Bda-Chr9:47617239 Bda13g01367 Bda-Chr13:36229677 0 dispersed
Bda13g01365 Bda-Chr13:36189195 Bda13g01367 Bda-Chr13:36229677 1.05E-39 proximal
Bda13g01366 Bda-Chr13:36211623 Bda13g01367 Bda-Chr13:36229677 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01367 K18195 - qsu:112026520 1009.21