Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g01367 | ATGGATAATGGCATCGTCCAAGTGACACTATCGAACCCAGATGGAATTGTCACTGGGATTAGATTTAATGGGATTGACAACCTGCTGGAAGTTCTTAACGACGAATCAAATAGAGGGTATTTCCTGCAATTACTAACCCGATATATGATCAAGGGGACAGATTTCAAAATTATAGTGCAGAATGAAGAACAGGTGGAGCTGTCTTTCACAAGATCATGGGATGTCTCTCTTGAGGGCAAGCTCGTACCTTTAAACATTGATAAAAGGTTCATTATGCTCAGGGGTTCTTCTGGGTTTTACTCCTACGCCATTTATGAACACTTGAAAGAATGGCCTGGTTTCAATCTAGATGAAACCAGAATCGCATTCAAACTCAGAAAAGACAAGTTTCATTATATGGCCATAGCAGACGACAGGCAACGACACATGCCTCTCCCTGACGATCGCTTGCCGTCAAGAGGCCAAGCTCTTGCCTATCCAGAGGCTGTTCTTCTTCTCAATCCCGTGGAGCCTGAGTTTAAAGGAGAGGTGGACGATAAGTACCAGTATGCTTGTGACAACAAAGATCTTCGAGTTCATGGTTGGATATCCACAGACCCACCGGTCGGATTTTGGCAAATCACGGCCAGTGATGAGTTCCGGTCTGGAGGACCCGTCAAACAGAATCTGACGTCACATGTCGGCCCGACCACCCTCGCCATGTTTCTCAGCGCTCACTATTCGGGATTAGATTTGGTGCCCAAATTTGGGTCAGGAGAGAGTTGGAAGAAAGTTTTTGGCCCTGTTTTTATCTACCTAAACTCTGTTTTCAACGGTGACGACCCATTTCTGCTCTGGGATGATGCCAAATTACAGATGATGATGGAAGTACAGAGCTGGCCGTATTCCTTCGTGTCGTCGGAGGACTTTCCGGCGTCGGACCAGAGGGGTAATCTCAGAGGCAGGCTACTTATCCTAGACAGGTACATTAGCGGCGACTGTATTGCAGCAAATGGTGCTTACGTTGGCCTAGCTCCTCCAGGAGATGCTGGTTCTTGGCAAAGAGAATGCAAGGAGTATCAATTTTGGACGAGAGCGGATGAAGAAGGTTTCTTTTCAATAATGGAAGTACGGGCCGGAGTTTATAAACTATATGCATGGGTTCCTGGGTTCATCGGAGATTATGCATACGACGTCGCCGTTGATGTTACGCCGGGATGTGAGATTGAGATGGGCGAAGTTGTCTATGAACCCCCAAGAGACGGCCCCACATTATGGGAAATAGGCGTTCCTGATCGATCAGCCGCAGAATTCTACGTCCCTGATCCAAATCCCATGTACATAAATAAGTTGTACATAAACCACCCTCAAAGGTTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGCCATTGCCGAAGATTCAGACAGTATGGGCTGTGGGAAAGATACGCAGAGCTTTACCCAGATGGAGACTTGGTCTATACTGTTGGCGTCAGTGATTACTCTAAAGACTGGTTTTTTGCGCAAGTTCCAAGGAAGAAAGGGGACAATTCATTTCAAGGTACGACCTGGCAAATCAAGTTCGAGTTAGAAGAAGTAGATTCGAATGCAACTTATAAACTCAGACTGGCTCTGGCTTCTGCAACTATGGCTGAATTACAGGTTCGAGTGAATGATTCATCGGCAAGTTCTGCTCTATTTTCGAGTGGAATAATAGGAAGAGATAACTCCATAGCCAGACATGGAGTTCATGGGCTGTACTGGCTTTTCAACGTGGAAATAGGAGGAGAGATGCTTGTTGAAGGTGATAACACAATATTTTTGACACAGCCAAGAAGTAGCAGCCCTTTCCAAGGGATTATGTATGATTATATTCGCTTAGAAGTTCAATTGAGTACACATAGCCTTCTGCATACTCCTCTAAAATTTAGAAGTAAAACGGGTATCTCAATCAGATACGATAGAAATGGGCGTACCATGAAATCTGACAATCTCATGAACATAAAGTCGAGCATATTGGTCCATCGTATAAGTAGTCTTCACAAGGAGAAAATATGCCGATTTGGTCAATCAATCAACTATAACCCAAATAAAGTCGTGATCTTTAAGTGTCTTAGGAAGTCCCACCACAAAGTCCATAGTGATATGCTCTCACTTCCACTGAGGTACCATAAGTGGTTGCAATGTACCAGTGGGTCGTTGATACTCCGCTTTGACTTGCTGACAAGTGAGACATTTTTCGACAAATTTAGATACATCCACCTTCAATCCACGCCACCAATAATGTTGTTTCAAGTCTCGATATATTTTGGGTTTCGCTGTGGTCGGAGGTTTGGGTTGGCGGTGTTTTTCTTCCGACGAGATAATTTCTCTCTGTTTTTTTTTCTTCTTCTTGGTCTTTCTCTAGTTTTCAGAACGAGAGAGATTGGTGAGATTTTATTCTCACCAATCATCCAATTTAAAGGAGATTTCTCCTTTAATTTTGGTAGGTCGTTAGTTGATTCTATGACGGAAGCACTGGAAACCCAAGTAAAGAGCAAGGTCTCCATTAAGGGTCACCTCCACACATACCGATTCTGTGACAACGTGTGGACCTTTATCTTGCAAGACGCATTGTTCAAGAACGAAGAATGCCAGGAGAATGTTGGCAGAGTCAAAATAGTGGCATGTGATTCCAAGTTACTAACACAGTAA | 2673 | 43.92 | MDNGIVQVTLSNPDGIVTGIRFNGIDNLLEVLNDESNRGYFLQLLTRYMIKGTDFKIIVQNEEQVELSFTRSWDVSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPGFNLDETRIAFKLRKDKFHYMAIADDRQRHMPLPDDRLPSRGQALAYPEAVLLLNPVEPEFKGEVDDKYQYACDNKDLRVHGWISTDPPVGFWQITASDEFRSGGPVKQNLTSHVGPTTLAMFLSAHYSGLDLVPKFGSGESWKKVFGPVFIYLNSVFNGDDPFLLWDDAKLQMMMEVQSWPYSFVSSEDFPASDQRGNLRGRLLILDRYISGDCIAANGAYVGLAPPGDAGSWQRECKEYQFWTRADEEGFFSIMEVRAGVYKLYAWVPGFIGDYAYDVAVDVTPGCEIEMGEVVYEPPRDGPTLWEIGVPDRSAAEFYVPDPNPMYINKLYINHPQRFLLLLLLLLRRHCRRFRQYGLWERYAELYPDGDLVYTVGVSDYSKDWFFAQVPRKKGDNSFQGTTWQIKFELEEVDSNATYKLRLALASATMAELQVRVNDSSASSALFSSGIIGRDNSIARHGVHGLYWLFNVEIGGEMLVEGDNTIFLTQPRSSSPFQGIMYDYIRLEVQLSTHSLLHTPLKFRSKTGISIRYDRNGRTMKSDNLMNIKSSILVHRISSLHKEKICRFGQSINYNPNKVVIFKCLRKSHHKVHSDMLSLPLRYHKWLQCTSGSLILRFDLLTSETFFDKFRYIHLQSTPPIMLFQVSIYFGFRCGRRFGLAVFFFRRDNFSLFFFLLLGLSLVFRTREIGEILFSPIIQFKGDFSFNFGRSLVDSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEECQENVGRVKIVACDSKLLTQ | 890 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 36229677 | 36244768 | - | Bda000186.3 | Bda13g01367 | 19498 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g01367 | 890 | Gene3D | - | 415 | 621 | - | - | |
Bda13g01367 | 890 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 622 | - | - | |
Bda13g01367 | 890 | SUPERFAMILY | Starch-binding domain-like | 351 | 400 | IPR013784 | GO:0030246 | |
Bda13g01367 | 890 | CDD | RGL4_C | 419 | 621 | - | - | |
Bda13g01367 | 890 | Pfam | Transcription initiation factor IIA, gamma subunit | 844 | 885 | IPR015871 | GO:0005672|GO:0006367 | |
Bda13g01367 | 890 | CDD | RGL4_M | 308 | 405 | IPR029413 | - | |
Bda13g01367 | 890 | Gene3D | - | 322 | 404 | - | - | |
Bda13g01367 | 890 | SUPERFAMILY | Transcription factor IIA (TFIIA), beta-barrel domain | 836 | 886 | IPR009088 | GO:0005672|GO:0006367 | |
Bda13g01367 | 890 | Gene3D | - | 839 | 889 | IPR009088 | GO:0005672|GO:0006367 | |
Bda13g01367 | 890 | CDD | TFIIA_gamma_C | 841 | 886 | IPR015871 | GO:0005672|GO:0006367 | |
Bda13g01367 | 890 | SUPERFAMILY | Galactose-binding domain-like | 414 | 621 | IPR008979 | - | |
Bda13g01367 | 890 | Pfam | Rhamnogalacturonate lyase family | 1 | 177 | IPR010325 | - | |
Bda13g01367 | 890 | Pfam | Polysaccharide lyase family 4, domain III | 417 | 620 | IPR029411 | - | |
Bda13g01367 | 890 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 622 | - | - | |
Bda13g01367 | 890 | CDD | RGL4_N | 1 | 275 | - | - | |
Bda13g01367 | 890 | Gene3D | - | 2 | 250 | IPR014718 | GO:0030246 | |
Bda13g01367 | 890 | Pfam | Polysaccharide lyase family 4, domain II | 331 | 402 | IPR029413 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00904 | Bda-Chr1:42028552 | Bda13g01367 | Bda-Chr13:36229677 | 6.22E-38 | dispersed | |
Bda03g00448 | Bda-Chr3:3841403 | Bda13g01367 | Bda-Chr13:36229677 | 8.82E-72 | dispersed | |
Bda09g01614 | Bda-Chr9:47617239 | Bda13g01367 | Bda-Chr13:36229677 | 0 | dispersed | |
Bda13g01365 | Bda-Chr13:36189195 | Bda13g01367 | Bda-Chr13:36229677 | 1.05E-39 | proximal | |
Bda13g01366 | Bda-Chr13:36211623 | Bda13g01367 | Bda-Chr13:36229677 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g01367 | K18195 | - | qsu:112026520 | 1009.21 |