Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01375 ATGGGCATCAAAGACGAAGGAGAAGCCCCTTTGTTGCGCTCAGGCGATGACCCAGATGAACGAGAACACCAACAGTTACTCCATATTGAATCAAATGGTGGAGATTGGGTTAGAAAAACTTGGTTAGAATCTAAGAAAATGTGGCAGATTGCCGGTCCCTCCATCTTCAGCCGTCTCGCCATGTTTTCAATCACCATCGTTACTCAATCATTCGCCGGCCACCTTGGGGACCTCGACCTCGCCGCTATTTCCGTCGGCACTACGGTTATTATCGCCATCAGCTTCGGCTTCTTGCTGGGAATGGCAAGCGCGCTGGAGACGCTCTGTGGCCAAGCGTATGGAGCCAAACAATATCACATGTTGGGTATATATATGCAACGTTCTTGGATTGTTTTATTCGCTTGCGCCATTTTTCTATTGCCTATGTTTGTATTTTCTACTCCATTACTGAAGTTCATTGGTCAGCCTGAGAATGTTGCCGAGCAGACGGGTTTGGTTGCGATGTGGTTGATTCCATTTCACCTGAGCTTTCCTTTTCAGTTCACTCTGCAGAGGTTCTTGCAGAGCCAGTTGAAGACTGGGGTGATAGTCTGGGTCTCAGGAGGGGCTTTTGTCCTACATTTGCTTGTGAGTTGGATTTTTGTTTATAAACTGAGGGTGGGGATTGAGTGGACTGCTTTGAGCATTGGTTTTTCATGGTGGGTTTCGGTTTTCGGAATGTTCGCCTATGTTATTTATGGGGGCTGTGCCAATACATGGACTGGTTTTTCTGTTCGAGCATTTCATGGCCTTTGGCAGTTCTTCAAGCTTGCAGTGGCATCTGGGGTCATGCTCTTGTTGGAGAACTTCTACTACAGAGTATTAATCATAGTATCTGGCTATTTGCATAACGCAGAGGTTGCGGTGGATGCTCTTTCGATATGCATCAGCATTTATGGATGGGAATCTATGATTCCCCTGGGATTTTTGGCTGCAACCGGCGTACGCGTAGCAAATGAACTGGGTGCTGGCAATGGAAAAGGAGCAAAGTTTGCAACCGGTATTTCAGTGATGACATCTATGATAGTCGGGCTTTTGTTTTGGTTGATTATCATGATCTTCCATGAAAAGCTGGCAATGATTTTTACCTCGAGTGTACCTGTAGTATCCATGATCGATGAATTATCTGTCTTCCTTGCCCTCACCATACTTCTCAATTGTATACAACCCGTTCTTTCAGGGGTAGCAGTCGGATCTGGTCGGCAAGCTCGAGTTGCCTTCATAAACGTTGGGAGCTACTATTTGATTGGGGTCCCTCTCGTTGTTCTCATGGGATGGTGGTCGTCTTTCGGCTATAAGGGTCTATGGGGTGGAATGATCTGTGGAACTGTGATTCAAACGATTGTACTGGCGATCGTGACGATACGATGCGAATGGGAAGATGAGGCGCTGAGGGCTCAGATTCATGCAGCCGGTCAAGCAGCTTCCAACCAAGATCAGCACAGTTCGAAAATGCCGATCTCTTGTCAAGTAAATGACTTCTTTTAA 1527 46.56 MGIKDEGEAPLLRSGDDPDEREHQQLLHIESNGGDWVRKTWLESKKMWQIAGPSIFSRLAMFSITIVTQSFAGHLGDLDLAAISVGTTVIIAISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFACAIFLLPMFVFSTPLLKFIGQPENVAEQTGLVAMWLIPFHLSFPFQFTLQRFLQSQLKTGVIVWVSGGAFVLHLLVSWIFVYKLRVGIEWTALSIGFSWWVSVFGMFAYVIYGGCANTWTGFSVRAFHGLWQFFKLAVASGVMLLLENFYYRVLIIVSGYLHNAEVAVDALSICISIYGWESMIPLGFLAATGVRVANELGAGNGKGAKFATGISVMTSMIVGLLFWLIIMIFHEKLAMIFTSSVPVVSMIDELSVFLALTILLNCIQPVLSGVAVGSGRQARVAFINVGSYYLIGVPLVVLMGWWSSFGYKGLWGGMICGTVIQTIVLAIVTIRCEWEDEALRAQIHAAGQAASNQDQHSSKMPISCQVNDFF 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36367981 36371004 + Bda000195.1 Bda13g01375 19506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01375 508 Pfam MatE 53 213 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda13g01375 508 Pfam MatE 275 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda13g01375 508 CDD MATE_eukaryotic 43 476 IPR045069 GO:0042910|GO:1990961
Bda13g01375 508 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 479 - -
Bda13g01375 508 PANTHER PROTEIN DETOXIFICATION 29 479 - -
Bda13g01375 508 TIGRFAM matE: MATE efflux family protein 53 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01375 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - pop:7486570 723.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01375 Bda-Chr13:36367981 Bda14g01330 Bda-Chr14:15024189 0 dispersed
Bda13g01375 Bda-Chr13:36367981 Bda13g01382 Bda-Chr13:36501926 1.59E-11 proximal
Bda10g00071 Bda-Chr10:1545605 Bda13g01375 Bda-Chr13:36367981 3.78E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1315 . . Cone20ag0535 . . . . Blo17g00107 . . Bda13g01375 . Bpe14g00469 . Bma02g00125 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129