Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01394 TCGGAGCTCTCTGATTTGGGGAATATGGAGCGTTATGAGATCGTGAAAAATATTGGGTCTGGAAATTTTGGAGTAGCCAAGCTCGTGAAAGACAAGCGGACGAAAGAACTTTATGCTGTCAAGTACATAGAGAGAGGCCAGAAGATAGATGAACATGTCCAGAGAGAAATCATAAATCATAGGTCATTGAAGCATCCCAATATTGTGAGATTCAAGGAGGTCCTCTTGACACCGACTCATCTAGCCATAGTGATGGAGTATGCTGCCGGAGGAGAACTTTTCGAGCGAATATGTAATGCGGGTAGATTCAGCGAGGATGAGGCCAGGTTTTTCTTCCAGCAATTGATATCTGGAGTCAGCTACTGCCATTCGATGGAAATTTGTCATAGAGATCTTAAGCTTGAAAATACGTTGTTAGATGGTAGTGCCGCGCCTCGGGTTAAAATTTGTGATTTCGGATACTCAAAGTCAGCTGTTTTCCATTCTCAACCAAAATCTACTGTCGGAACACCTGCTTACATTGCTCCCGAAGTGTTGTCGAAAAAAGTGTATGACGGGAAGATTGCAGATGTTTGGTCATGTGGAGTCACCCTTTACGTGATGCTAATCGGGGCGTATCCCTTTGAAGATCCCGAAGATCCTAGAAACTTCAGAAAAACAATCGGGCGAATACTCAGCGTCCACTATTCGATCCCGGATTATGTGCGCGTTTCAACCGAATGTAAACATCTTCTATCTCTAATATTCGTGGCAAGCCCCGAAAAGAGAATAACGATACCGGAAATAAGAAGGCATCCGTGGTTCTTGAAGAATCTGGCAGTGGAGCTGGTGGAAGGGGGAAGCTGGGAGAGCAAAGAGGTAAATGAGCCTTCACAAAGCACTGAAGAGGTTGTTTCGATAATACACGAGGCAAGAAAAGCTGTGCAGGTGCCTAAGCTTGGGGGGCTTCTTCTGGGCACTAGCAGCATGGACCTTGATGACTTAGATGCTGATCTTGATGATGTTGAAACCAGTGGGGAGTTTGTGTGTCATATGTGA 1038 45.09 SELSDLGNMERYEIVKNIGSGNFGVAKLVKDKRTKELYAVKYIERGQKIDEHVQREIINHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMEICHRDLKLENTLLDGSAAPRVKICDFGYSKSAVFHSQPKSTVGTPAYIAPEVLSKKVYDGKIADVWSCGVTLYVMLIGAYPFEDPEDPRNFRKTIGRILSVHYSIPDYVRVSTECKHLLSLIFVASPEKRITIPEIRRHPWFLKNLAVELVEGGSWESKEVNEPSQSTEEVVSIIHEARKAVQVPKLGGLLLGTSSMDLDDLDADLDDVETSGEFVCHM 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36624073 36625900 + Bda000219.1 Bda13g01394 19525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01394 345 PANTHER SERINE/THREONINE KINASE 10 337 - -
Bda13g01394 345 Gene3D Transferase(Phosphotransferase) domain 1 88 276 - -
Bda13g01394 345 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 10 337 - -
Bda13g01394 345 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Bda13g01394 345 CDD STKc_SnRK2 11 267 - -
Bda13g01394 345 SUPERFAMILY Protein kinase-like (PK-like) 9 276 IPR011009 -
Bda13g01394 345 SMART serkin_6 12 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g01394 345 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Bda13g01394 345 Pfam Protein kinase domain 12 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g01394 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Bda13g01394 345 ProSiteProfiles Protein kinase domain profile. 12 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01394 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - qsu:112026336 587.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01394 Bda-Chr13:36624073 Bda03g00094 Bda-Chr3:895942 4.76E-64 dispersed
Bda08g00611 Bda-Chr8:6234716 Bda13g01394 Bda-Chr13:36624073 6.84E-142 transposed
Bda14g00524 Bda-Chr14:3788176 Bda13g01394 Bda-Chr13:36624073 2.30E-174 transposed
Bda14g01197 Bda-Chr14:11848986 Bda13g01394 Bda-Chr13:36624073 4.52E-161 transposed
Bda14g01227 Bda-Chr14:12401936 Bda13g01394 Bda-Chr13:36624073 2.11E-173 transposed
Bda01g00892 Bda-Chr1:41909105 Bda13g01394 Bda-Chr13:36624073 9.32E-176 wgd
Bda10g00076 Bda-Chr10:1622317 Bda13g01394 Bda-Chr13:36624073 5.64E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0520 . . . . Blo17g00113 Blo18g00128 . Bda13g01394 . Bpe14g00461 Bma01g01397 Bma02g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70016 PF00069 Pkinase 2.40E-71 CL0016 Bda PK