Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01400 ATGGGCGTCGTCGACCCCCGATCTAACGAACAACTCGGCCTGGATTTCCCCCCTCTCCTTGACGTTCGGCTCTTCTCCCAGTCCGATCTCTACTCTCTCTCCCGTGCCTCTTCTTCCGCCTCCATTTTTTACGACAACGATGACGTTTTAGTGCCCAAGATCGACCGCTCCCTCTTTAACGAGTCCGCTGGGAGTCGCAAACAAACCTACTCCCGCCTCCGTTTTGCCACCCGCAAACGTCAATTTTCTTCCGCGGAAATCTCCCCCAACGTCTCCGTTTGCCGCCAATTCCCCGAGGAGGAGAGGTCGAAAATTGTTACGCTCCTCAAGCAACTTTTTGCGGATGAATCTCCGATTAGTGAAAAGAACGAGGAATGCATCAGCGATGAAGATGAGGGCCTTTTCCCTATCCACATTGGACGAGGTAGTGATGAAGCCGTGGTTGATGGAATCAATGTTTTTATCCAGAATATTCCTGTTGAAGTTGTCTCAGAGATGGGCGAGCTGAAAAAAAAGAAACGCGGACGTCCTCGAAAGAATGAAAATTCAAGCAATGTTGCCATCCAGAATATTTCTCATGATGTTGTCCCTGGAATTGGCGAGCAAGGAAAGAGGAAGCGAGGTCGGCCTCGTAAGAATGAAATTCAAGGTGTGTGTATTTCAGCTGTTGTGAGCGAGACTGCAAGAAGAGTGTGTCTGGACGAGGCCCTGGATACGGATAAAGAGAAGGTGATTGTTAATAAGCATGGAAATGTGATGGATTTGGCTGCGGGGAACATGGAGAATCGGTTTGGGGAAGCGCTTGGAGAGCAGAGAAAAAGGAAGCCAGGGCGGCCTCGTAAGAATGAAAATCTAGGTATCCACTATGCTCCTGTAGTGCACGAAACTGTGGGTAGAGAGCGTGTGGGGGAGGCGAGGGATATGGAGAAAGATGAACTGATTGTTAATCAGGAGGGCATTGTCTTGGACTTGGCTGCATCAGTAAATACAGAGGATCATCATGGAGAGAAGCTAGGAGAGCAGAGAAAAAGGAAGCAAGGGCGGCCCCATAAGAATGGAAACCATGGGATTCGTTATGCGCCTGTAGAGCACCAGACTTTAGGCAGAGAGCATGTAAAGGAGGCGTGGGATATGAAGACAGAGATGGTGACTGTTAACGAGAATGGAAATGTCGTGGACTTGGCTATGTTAGGACGTGTGGAAAATCCATTCGAAGAGGAGCTGAGGAAGAGGACAGAGGGGATGGAGACAGAGGCCGAGCTATTAGGGTTTTTAAGAGGTCTGGTTGGGGATTGGGGGAGTTGGAGAGAGAGGAGGAAGATTGTTCGTGCCAGTGATTTTGGTGAAGTACTGCCCAAGGATTGGAGGCTTATACTTTCTCTCAAGAAGCGAAAAGGCATCGTATGGTTGCATTGCCACAGATATATAAGCCCTAATGGGCGACAGTTTGTCTCTTACAAGGAAGTTTCTTCATACTTGCTCTCCCTTTATGGACTCCAAGGTGCAAAGCAGATTGAATCAGGTCATACTGGGGAAGGTCAATTAGTCCGCTCAACTGTTTCTAGGCATAATGCAGATCTTAACAGAGAAGATGGGAGTGGTGCTGACATTGGTAGTAGTTCGCCATTGCTTGTTGCATCTATACCATCTGATCACGAAGACCAGTCTATCTTCTTGGAGACTTCAAATACACTGAATGCTCAAAGAGACGAAGCTTTGAAATGTCTCCACTGGAACATGGCTTTTAATGGGAAGAACGACTTTGAAGCGCCAGCCGTCATTTCAGCAGAGGAATGCAAAACCGTGTGA 1809 48.15 MGVVDPRSNEQLGLDFPPLLDVRLFSQSDLYSLSRASSSASIFYDNDDVLVPKIDRSLFNESAGSRKQTYSRLRFATRKRQFSSAEISPNVSVCRQFPEEERSKIVTLLKQLFADESPISEKNEECISDEDEGLFPIHIGRGSDEAVVDGINVFIQNIPVEVVSEMGELKKKKRGRPRKNENSSNVAIQNISHDVVPGIGEQGKRKRGRPRKNEIQGVCISAVVSETARRVCLDEALDTDKEKVIVNKHGNVMDLAAGNMENRFGEALGEQRKRKPGRPRKNENLGIHYAPVVHETVGRERVGEARDMEKDELIVNQEGIVLDLAASVNTEDHHGEKLGEQRKRKQGRPHKNGNHGIRYAPVEHQTLGREHVKEAWDMKTEMVTVNENGNVVDLAMLGRVENPFEEELRKRTEGMETEAELLGFLRGLVGDWGSWRERRKIVRASDFGEVLPKDWRLILSLKKRKGIVWLHCHRYISPNGRQFVSYKEVSSYLLSLYGLQGAKQIESGHTGEGQLVRSTVSRHNADLNREDGSGADIGSSSPLLVASIPSDHEDQSIFLETSNTLNAQRDEALKCLHWNMAFNGKNDFEAPAVISAEECKTV 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36683795 36686440 + Bda000226.1 Bda13g01400 19531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01400 602 Pfam AT hook motif 171 182 IPR017956 GO:0003677
Bda13g01400 602 Pfam AT hook motif 204 213 IPR017956 GO:0003677
Bda13g01400 602 Pfam AT hook motif 273 284 IPR017956 GO:0003677
Bda13g01400 602 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 186 IPR037472 -
Bda13g01400 602 SMART AT_hook_2 171 183 IPR017956 GO:0003677
Bda13g01400 602 SMART AT_hook_2 343 355 IPR017956 GO:0003677
Bda13g01400 602 SMART AT_hook_2 273 285 IPR017956 GO:0003677
Bda13g01400 602 SMART AT_hook_2 204 216 IPR017956 GO:0003677
Bda13g01400 602 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 340 588 IPR037472 -
Bda13g01400 602 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 201 268 IPR037472 -
Bda13g01400 602 MobiDBLite consensus disorder prediction 331 357 - -
Bda13g01400 602 PRINTS AT-hook-like domain signature 202 213 IPR017956 GO:0003677
Bda13g01400 602 PRINTS AT-hook-like domain signature 171 181 IPR017956 GO:0003677
Bda13g01400 602 PRINTS AT-hook-like domain signature 271 281 IPR017956 GO:0003677
Bda13g01400 602 SUPERFAMILY DNA-binding domain 448 495 IPR016177 GO:0003677
Bda13g01400 602 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 270 338 IPR037472 -
Bda13g01400 602 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 270 338 - -
Bda13g01400 602 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 201 268 - -
Bda13g01400 602 Pfam Methyl-CpG binding domain 449 493 IPR001739 GO:0003677
Bda13g01400 602 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 186 - -
Bda13g01400 602 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 340 588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01400 - - - mnt:21386634 300.441
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00718 Bda-Chr8:8055553 Bda13g01400 Bda-Chr13:36683795 2.50E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g414 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01114 Cam08g1570 Cec08g1140 Cco08g1267 Clacu08g1271 . Cre08g1052 . Cone7ag1595 Cone17ag1216 Cone20ag0509 . . . . . . . Bda13g01400 . Bpe14g00455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006623 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 37