Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01409 ATGGTTGGGAATGTGATGGAAGCGAAGGCGAACAACGGGAAGGTGCCCTTGTTGACTGATGATTTCGATCTGATTGCTGCCGTTGCGGAGCCGCTGCCCCCAGTGGCGGAAACCGACTTGTGTGACGGAGGAGCTGAGGAGGATAAGACGGGAAGGAAAGAGATGGTTCTTGGAAGAAACGTGCACACCACGTGTCTTGCTGTTACAGAGCCAGAGGCTAATGACGAGTTTACCGGTGACAAGGAGGCTTTTATGGCCGGTGTGCTGGCTCGGTACAGGAAAACTCTGATTGAGAGGACCAAGCATCATTTAGGTTACCCGTACAATTTGGACTTCGATTATGGGGCTTTGGCCCAGTTGCAGCATTTCTCTATCAATAATCTTGGGGATCCGTTTATCGAAAGTAACTATGGTGTGCATTCCAGGCAATTTGAAGTAGGGGTGTTGGATTGGTTTGCACGCCTTTGGGAGATAGAGAAAAATGAGTATTGGGGTTACATAACCAATTGTGGGACCGAAGGTAATCTTCATGGGATATTAGTCGGGAGGGAAGTTTTACCTGATGGGATTCTTTATGCGTCAAGAGAATCTCATTATTCTGTTTTCAAAGCTGCTAGAATGTATAGAATGGAATGTGTCAAAGTGGGAACTCTGGTCTCTGGAGAGATTGATTGCACTGATTTTAAAGCTAAACTGAGCGCTAACAAAGAGAAACCAGCCATTATCAATGTTAATATAGGTAATCAGCGTTCTAACACGCTCTCATGTTTTAACTTGGTTCCAGGAACGACGGTGAAAGGAGCCGTCGACAACCTCGATCTCGTGATACAGACTCTTGAGGAATGTGGATTCACTAAGGATCGGTTTTATATTCACTGTGATGGAGCTTTGTTTGGACTTATGATGCCTTTCGTCAAGCGTGTACCGAAGGTTACTTTCAAAAAGCCAATTGGAAGTGTTAGTGTTTCTGGCCACAAATTTGTTGGATGTCCTATGCCTTGTGGTGTCCAAATGACACGGTTGGAGCACATAAATGCACTGTCAAGGAACGTTGAGTATCTTGCCTCAAGAGATGCGACTATCATGGGAAGTCGAAATGGCCATGCTCCAATCTTCCTTTGGTACACCCTCAACAGAAAAGGGTACAAAGGGTTCCAAAAGGAAGTACAAAAGTGTCTCAGAAATGCACATTACCTTAAAGACCAACTCAGAGGGGCTGGAATCAGTGCCATGCTGAACGAGCTTAGCAGCACAGTCGTGTTCGAACGACCCATTGATGAGGAGTTTGTTCGAAATTGGCAATTAGCATGTCAAGGAAATATTGCTCATGTTGTGGTCATGCCTAATGTCACCATTGAAAAGTTGGATGATTTTCTGAGTGATCTAATCGAGAAAAGATCAACATGGTATCAGGATGAGAAGACCAAGCCTCCTTGTGTTGCAGAAGAGATAGGAGCTGAGAATTGTTCTTGCCAGAACCACAAGTAA 1488 44.96 MVGNVMEAKANNGKVPLLTDDFDLIAAVAEPLPPVAETDLCDGGAEEDKTGRKEMVLGRNVHTTCLAVTEPEANDEFTGDKEAFMAGVLARYRKTLIERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSVFKAARMYRMECVKVGTLVSGEIDCTDFKAKLSANKEKPAIINVNIGNQRSNTLSCFNLVPGTTVKGAVDNLDLVIQTLEECGFTKDRFYIHCDGALFGLMMPFVKRVPKVTFKKPIGSVSVSGHKFVGCPMPCGVQMTRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDQLRGAGISAMLNELSSTVVFERPIDEEFVRNWQLACQGNIAHVVVMPNVTIEKLDDFLSDLIEKRSTWYQDEKTKPPCVAEEIGAENCSCQNHK 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36811282 36813087 + Bda000236.1 Bda13g01409 19540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01409 495 Pfam Pyridoxal-dependent decarboxylase conserved domain 190 417 IPR002129 GO:0016830|GO:0019752|GO:0030170
Bda13g01409 495 Gene3D Aspartate Aminotransferase, domain 1 378 466 IPR015422 GO:0003824
Bda13g01409 495 PANTHER SERINE DECARBOXYLASE 4 495 - -
Bda13g01409 495 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 319 340 IPR021115 GO:0016831
Bda13g01409 495 PANTHER - 4 495 - -
Bda13g01409 495 SUPERFAMILY PLP-dependent transferases 100 464 IPR015424 -
Bda13g01409 495 Gene3D - 120 377 IPR015421 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01409 K25193 SDC; serine decarboxylase [EC:4.1.1.-] - vvi:100258141 834.713
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00512 Bda13g01409 CCT
Bda11g00752 Bda13g01409 BCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g340 . Blo12g00691 . Bda03g00512 Bpe02g00085 Bpe04g00468 . Bma01g02633 . . Cma01g01411 . . . . . . . . . . . . . . . . . . . . Cone4ag1365 Cone7ag1566 . . Lsi04g02356 Csa04g01838 . . . . Bda11g00752 Bda13g01409 . . . . Sed12g1436 Cmo01g01461 . . . . . . Cpe02g00532 Bhi09g02629 Tan01g3975 Cmetu07g0508 . Hepe01g2251 Mch11g0798 . Cla11g01508 Cam11g1567 Cec11g1596 Cco11g1594 Clacu11g1723 Cmu11g1543 Cre11g1958 . . Chy07g00694 Cme07g00907
Vvi18g1283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00126 . . Bda13g01409 . . . Bma02g00148 . . . . . . Car15g00556 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004732 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 3 1 1 2 1 1 1 3 1 1 42