Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01413 CAGAGCAGTGTTCTTAGATCCACCATGGTTATGGAGAGCCATAAGCTTTACGCTGCAATGATTTTCGTACAGTTAGTTTATGCAGGAACAACTGTGCTCTCCAAAGAAGCACTTGCCCAAGGGATGAACCCTCATGTCTTCGTTTTCTATCGCCAAGCCTTTGCTTCTGTCGTTTTGGCTCCCTTCTTCGTCTTCTTCGAAAGGGAAAGTGGTTCTGCAATTTCCTTCAGCTTGCTATGCCAAATCTTCATGGTTTCTTTCTGTGGGATAACGCTGAATTTGAATCTTTACTATATTGCGCTCGTACACACCTCTGCAACATTTGCTTCAGCTACCTGCAACGCAATTCCAGCCATTACCTTCGTTCTATCTCTCATTTTCAGAATGGAAAGCGTTTCTTTGAAGAAACTGCATGGAATAGCAAAGATAGCAGGCTCGGTTTTGGGTCTTTCTGGGGCTTTTGTCTTTGCTTTTTTGAAGGGTCCGCCATTAAAGATTTCAAAATGGCACCCAGAAATTGAAAACCACTCCTCGAACAAAAACTCTGTTCAAGGCTCGCTGCTCATGCTCTTAGCCAACGTCTTTTGGTCTTTATGGATTATTTTACAGGGAATGATTGTTCAGAAATATCCGGCAAAACTAAGACTAACTACAATGCAATGCTGGTTTAGCTGCATACAAACAGCTGTCTGGGCTGCCTCCGTGGAAAGACGCCCATCGGCTTGGAAGCTCGGGTGGAATCTCAACCTACTCTCAGTAGCATATTGCGGAGTGTTTGTGACTGGAGTTACAAACTGGCTTCAAGTCTGGTCGGTGGAGAAGAAAGGCCCGGTCTTTACAGCCATGTTCACGCCCTTGTCTCTCATCATAACAGCTCTCTTCTCAGCAATATTCTGGAAAGAAGCTCTTCACTGGGGAAGCTTTGGAGGGGGAGTATTACTGGTGATGGGGCTGTACGGGGTGTTGTGGGGGAAGAAGAAGGAAGAAAACAAAGAGGAAAAGGGCGACGAAGCCAGAGAGGAAGTTCATCTGGAGTGCATTACACATCAGTGA 1053 45.58 QSSVLRSTMVMESHKLYAAMIFVQLVYAGTTVLSKEALAQGMNPHVFVFYRQAFASVVLAPFFVFFERESGSAISFSLLCQIFMVSFCGITLNLNLYYIALVHTSATFASATCNAIPAITFVLSLIFRMESVSLKKLHGIAKIAGSVLGLSGAFVFAFLKGPPLKISKWHPEIENHSSNKNSVQGSLLMLLANVFWSLWIILQGMIVQKYPAKLRLTTMQCWFSCIQTAVWAASVERRPSAWKLGWNLNLLSVAYCGVFVTGVTNWLQVWSVEKKGPVFTAMFTPLSLIITALFSAIFWKEALHWGSFGGGVLLVMGLYGVLWGKKKEENKEEKGDEAREEVHLECITHQ 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36847609 36849507 + Bda000240.1 Bda13g01413 19544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01413 350 Pfam EamA-like transporter family 18 150 IPR000620 GO:0016020|GO:0016021
Bda13g01413 350 Pfam EamA-like transporter family 185 322 IPR000620 GO:0016020|GO:0016021
Bda13g01413 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 225 328 - -
Bda13g01413 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 151 - -
Bda13g01413 350 PANTHER WAT1-RELATED PROTEIN 13 334 - -
Bda13g01413 350 PANTHER WAT1-RELATED PROTEIN 13 334 IPR030184 GO:0016021|GO:0022857
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01413 - - - vvi:100247036 442.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00365 Bda-Chr10:34806426 Bda13g01413 Bda-Chr13:36847609 3.00E-86 dispersed
Bda12g00523 Bda-Chr12:8069883 Bda13g01413 Bda-Chr13:36847609 1.49E-07 dispersed
Bda13g01413 Bda-Chr13:36847609 Bda03g00533 Bda-Chr3:4434334 1.61E-80 dispersed
Bda07g00165 Bda-Chr7:2048804 Bda13g01413 Bda-Chr13:36847609 1.31E-83 transposed
Bda07g00185 Bda-Chr7:2253361 Bda13g01413 Bda-Chr13:36847609 1.65E-09 transposed
Bda08g00490 Bda-Chr8:5011608 Bda13g01413 Bda-Chr13:36847609 1.64E-77 transposed
Bda11g00413 Bda-Chr11:4446787 Bda13g01413 Bda-Chr13:36847609 5.85E-62 transposed
Bda01g00873 Bda-Chr1:41642124 Bda13g01413 Bda-Chr13:36847609 1.63E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244