Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01416 ATGAGGATCTGCTCTTTCTTTCTGCTGATTGAATTCGAGCTTTTGTATTCTAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGAATGTTTTGGAAAACTGAGGGAATTTTTTCAGAGGACATGGGCTGAATTATGTTGTTCTGCTTGCTCCTGCATACAGCTCTTCTGGCCTAAAATTGTTTTGCGTAAATGGCTCAACATCAATGCAAAAGAATCGGATTTCAGCGCTGACACCGAGGACGAAGACGATGCCGATTTTGATTCGGAAGCTGAAGTGGACGACCAATGGGGTAGGAAATCTCGGTTTACAGCGGACAAAGGAGACGATGTCCAGGTTGATGCTGATGATGCATTGCCAAGGTTAAGAAGACGAAAATCAGAAACTTTTAGAACACAGTACATAAACACAAAAGAACTCAGAATATGTGTTGGGACGTGGAATGTTGGAGGGAAAATTCCATCAGAAGACCTTGATATTGATGAGTGGCTGGATACCAGTGAGCCAGCTGACATCTATGTGCTCGGCCTCCAGGAGATTGTTCCACTGAATGCTGGAAACATATTTGGTGCTGAAGACAGTAGACCAGTTCCGAGGTGGGAAAGCATTTTTCGTGAGTCATTGGATAGAGTTAGACCAATAACCAAGCTTAAAAGTTTAACTGATCCCCCATCTCCATCAAAGTTTAAGCCATCCGATGACAACCCAGATTTTGAAGAGGATTTTTTGCAGGAAAGTGATAGTGATAGTGGTGAGGAAGTCCATCCTTTTGATGGAGAATTTTCTGGGTTTGAAGAAGTGAAAGATAAAACAGCCCTGGATCAAACTATCCTCATTCGAGATGGAGAAAATCATGACAGTGCAAAGTTCCTCAGAAGCAGTTCATTACCAAAAAATTTACAGAGACAATTCTCTTCTCCTAAGATGTTGAACAGAGTAACTGAAAATAATGGAGCACACACCTCTCAACAAATTAGAAAATTATCCAGGATGCTTAGTGGGTCTGAAAGAATTGGTTTGTCATGGCCAGAGCGTCCATTAAACATGCTACCTAGACATGTTCTAGAGAGACCTAATTCCTTCAAATCGATAAAATCTTTCCAAGCATCTAAATCATTTGTAACATACAATTCTTTCAAGTCAACTATTAATGATGCACCATCACAAATTGCTTTGCTTGCGGACATTGACCTTGAATCACTCTTGAAGAGGAAAAGACGTTCATCTTATGTCAGGATCATAAGCAAGCAGATGGTTGGTATTTTTCTCTCTATATGGGTCCGCAGGAGCTTGCGAAGACATGTCCGAAACCTTAGGGTATCTACTGTTGGTGTTGGTGTGATGGGTTATATTGGTAACAAGGGATCAGTGTCAGTTAGCATGTCTATATATCAGACTCCATTTTGTTTCATATGTACTCATCTGACATCAGGAGAAAAAGAAGGAGACGAACTTAAAAGAAATGCTGATGTGCATGAAATACATAGAAGAACTAATTTTTATACACTTTCTGGTGTTGGACTTCCAAAAACCATCCATGATCACGAGAGGATAATCTGGCTGGGTGATTTGAATTACCGTATTAACTTGTCATACGAAAAAACTCGAGAACTTATCTCTAAAAAGGAGTGGTCGAAATTAAATGAGAACGACCAGCTTGTAAAAGAATTTAAGAAAGGTCGTGTATTTGATGGATGGTCAGAAGGCACTTTAAATTTTCCACCAACATATAAATATGAAACTAACTCAGAGAACTATGTTGGCGATGATCCTAAAGCTGGGAGGCGAACACCAGCCTGGTGTGATCGCATACTCTCACATGGCAAGGGATTGAAACTATTGAGTTACAGGAGGACTGAAATTAAGCTCTCCGATCACCGACCTGTGACAGCCACATTTATGGCCGATGTCGAGGTGTTTTGTCCACGGAGGCTACAACGAGCCCTTACTTTCACTGATGCTGAGATTGAACAAGATGGAGTCATCACCAATATAGATATTAATGCTATATATTAA 2487 39.04 MRICSFFLLIEFELLYSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSECFGKLREFFQRTWAELCCSACSCIQLFWPKIVLRKWLNINAKESDFSADTEDEDDADFDSEAEVDDQWGRKSRFTADKGDDVQVDADDALPRLRRRKSETFRTQYINTKELRICVGTWNVGGKIPSEDLDIDEWLDTSEPADIYVLGLQEIVPLNAGNIFGAEDSRPVPRWESIFRESLDRVRPITKLKSLTDPPSPSKFKPSDDNPDFEEDFLQESDSDSGEEVHPFDGEFSGFEEVKDKTALDQTILIRDGENHDSAKFLRSSSLPKNLQRQFSSPKMLNRVTENNGAHTSQQIRKLSRMLSGSERIGLSWPERPLNMLPRHVLERPNSFKSIKSFQASKSFVTYNSFKSTINDAPSQIALLADIDLESLLKRKRRSSYVRIISKQMVGIFLSIWVRRSLRRHVRNLRVSTVGVGVMGYIGNKGSVSVSMSIYQTPFCFICTHLTSGEKEGDELKRNADVHEIHRRTNFYTLSGVGLPKTIHDHERIIWLGDLNYRINLSYEKTRELISKKEWSKLNENDQLVKEFKKGRVFDGWSEGTLNFPPTYKYETNSENYVGDDPKAGRRTPAWCDRILSHGKGLKLLSYRRTEIKLSDHRPVTATFMADVEVFCPRRLQRALTFTDAEIEQDGVITNIDINAIY 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36862151 36867710 + Bda000243.1 Bda13g01416 19547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01416 828 Gene3D Endonuclease/exonuclease/phosphatase 518 820 IPR036691 -
Bda13g01416 828 Gene3D Endonuclease/exonuclease/phosphatase 275 379 IPR036691 -
Bda13g01416 828 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 3 212 819 - -
Bda13g01416 828 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 212 819 IPR045849 GO:0004445|GO:0046855
Bda13g01416 828 SUPERFAMILY DNase I-like 286 806 IPR036691 -
Bda13g01416 828 MobiDBLite consensus disorder prediction 18 185 - -
Bda13g01416 828 MobiDBLite consensus disorder prediction 372 417 - -
Bda13g01416 828 SMART i5p_5 483 798 IPR000300 GO:0016791|GO:0046856
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01416 - - - bhj:120075315 875.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01281 Bda-Chr6:43400791 Bda13g01416 Bda-Chr13:36862151 9.18E-157 dispersed
Bda13g01416 Bda-Chr13:36862151 Bda14g00019 Bda-Chr14:171979 6.19E-15 dispersed
Bda13g01416 Bda-Chr13:36862151 Bda13g00109 Bda-Chr13:1501349 1.03E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1334 . . . . . . . . Cmo04g02580 Cmo15g00580 . . . . . . Cpe13g00701 Bhi04g01737 . . . . . . Cla08g00742 Cam08g1169 Cec08g0759 Cco08g0867 Clacu08g0876 . Cre08g0677 . . Cone17ag0768 Cone20ag0358 . . . . . . . Bda13g01416 . . Bma01g01429 . . . . . . Car04g02373 Car15g00534 Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00578 . Chy03g00484 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003115 1 10 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 52