Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01417 ATGAATAACCTTCTCGTATCCTTATTGTTTCTCTATCAATCTTCGCTTTCCATTTTTTCCCAGCCGGCGCTTGCTAGAGTCGCTCATGATTTCAAGAATACTACCAATGCAAAATTTGGGACAATTCTACTCCAGAAGGATCAACCTCACGGAAGAATTGATGGTTACATGACTAATGCTGAACTTGAAGAGGCTATATTGGCATTTGGAAGAAAGTGTACGAACATTTCTCGGATATACAGTATAGGAGAAAGTGTAAGGGGGCTTCCACTGTGGGTCATGGAAATTTCTGACAAGCCTGGGAAGGAAGAAGCTGAACCTGCATTCAAGTACATTGGAAATGTGCATGGGGATGAGCCTGTTGGGCGTGAGCTTCTATTACGACTTGCCAATTGGATATGTGATAACTATTTGAAGGATCCCTTGGCTACGATGATTGTGGAAAACGTTCATCTTCATATACTTCCATCTATGAATCCTGATGGTTTTTCTCTTAAAATGCGCGCTAATGCCAATGGCATTGACCTGAATAGAGATTTTCCTGACCAGTTCTTTCCCGTCAATAATGATGAAAGTGCACGAGAGCCGGAGACTAGGGCAATAATGAACTGGTCGAGACAGATACATTTTACTGCATCTGCCAGTTTGCATGGGGGTGCTCTGGTTGCAAATTACCCTTGGGATGGTTCCGAGGATAAAAGGAGACATTACTATGCATGTCCAGACGATGCAACATTCCAATTCCTGGCAAAAGTTTATAGTCACTCTCACTACAATATGTCTACCAGCAAGGAATTTCAAGATGGAATTACAAACGGAGCTGCATGGTACCCCATATATGGTGGCATGCAGGACTGGAATTATATACATGGCGGTTGTTTTGAATTAACTTTAGAGATTAGTGATGACAAATGGCCTGCTGCAAGTGAGCTTTCTACTATATGGGAATACAACAAAATGAGCATGCTAAATCTCATTGCAAGCCTGGTGAAGACAGGAGTGCATGGGAGAATTTTCTCATCGGATAGTGGAAGGCCTCTTCCTGGCTTTATTACAATTAAGGGAGTAAATTACTCGGTTAAAGCCAGTAAAACATTTGGGAATTTCCATCGATTGGCAACCTCGGGCCAGAAATATGAAGTTACAGCCACAATGCCTGGATACCGATCGAAAACTACATGTATTTGGTTGGGAGATGGACCCATGGCTGTGGACTTCATTCTTGACCCAGAGCTTGCGACCACAGGTAACTCACTCAAAACTCTCTGTGATTGTCCTAACTGTGGAAGCAAGGGCAGACCTGAGTTTGTAGAGTACCTTTGGGGGGCTAATTTGGAAGTATACATAGTCATTGCCATTGTTTTAGGATTTCTTTGCCTCTTGTTAAGGAGGAGGGTGAAATCTAGCCCCTCCAAACAAAGGCAGAGCTTGACACCAAAAAGGTCGACCGCGATCTGA 1458 43.14 MNNLLVSLLFLYQSSLSIFSQPALARVAHDFKNTTNAKFGTILLQKDQPHGRIDGYMTNAELEEAILAFGRKCTNISRIYSIGESVRGLPLWVMEISDKPGKEEAEPAFKYIGNVHGDEPVGRELLLRLANWICDNYLKDPLATMIVENVHLHILPSMNPDGFSLKMRANANGIDLNRDFPDQFFPVNNDESAREPETRAIMNWSRQIHFTASASLHGGALVANYPWDGSEDKRRHYYACPDDATFQFLAKVYSHSHYNMSTSKEFQDGITNGAAWYPIYGGMQDWNYIHGGCFELTLEISDDKWPAASELSTIWEYNKMSMLNLIASLVKTGVHGRIFSSDSGRPLPGFITIKGVNYSVKASKTFGNFHRLATSGQKYEVTATMPGYRSKTTCIWLGDGPMAVDFILDPELATTGNSLKTLCDCPNCGSKGRPEFVEYLWGANLEVYIVIAIVLGFLCLLLRRRVKSSPSKQRQSLTPKRSTAI 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36870264 36885177 - Bda000244.1 Bda13g01417 19548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01417 485 Pfam Zinc carboxypeptidase 66 319 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bda13g01417 485 SMART zn_carb 56 418 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bda13g01417 485 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 45 406 - -
Bda13g01417 485 SUPERFAMILY Carboxypeptidase regulatory domain-like 333 412 IPR008969 -
Bda13g01417 485 Gene3D - 332 411 - -
Bda13g01417 485 CDD Peptidase_M14NE-CP-C_like 333 408 - -
Bda13g01417 485 SUPERFAMILY Zn-dependent exopeptidases 54 327 - -
Bda13g01417 485 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 107 129 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bda13g01417 485 PANTHER CARBOXYPEPTIDASE D 45 406 IPR015567 GO:0004181|GO:0006518|GO:0008270
Bda13g01417 485 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 214 227 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bda13g01417 485 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 107 121 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bda13g01417 485 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 173 181 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bda13g01417 485 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 82 94 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bda13g01417 485 CDD M14_CP_plant 56 328 - -
Bda13g01417 485 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 2 signature. 217 227 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bda13g01417 485 Gene3D Zn peptidases 55 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01417 - - K07752 tcc:18592698 691.804
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1320 . . . . . . . . Cmo04g02579 . . . . . Sed11g1378 . . Bhi04g01745 Tan11g1099 . . Hepe02g2814 . Lcy10g1371 Cla08g00746 Cam08g1173 Cec08g0763 Cco08g0870 Clacu08g0879 . Cre08g0681 . . . Cone20ag0364 . . . Cme03g01053 Blo17g00133 . . Bda13g01417 . . . Bma02g00153 . . . . . Car04g02372 . Cpe01g02133 . . . . . . . . . . . . . . . Lsi08g00575 . Chy03g00488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010573 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32