Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01422 ATGGCTATGCGCGTGTACCAAGTCTGGAAGGGTAGTAATAAATTTATCCTTGGTGGGAGACTGATATTTGGACCTGATACAAGGTCATTGTTTGTCACGTTGTTGCTGATTGGTGCTCCCGTTATAACATTTTGTGTATTCGTTGCAAGGCATTTACGTCACAAGTTTGAGTCACAGAATGCGGGTTATGCAATTCTGGGGGTTGCAATTGTGTTTACCATCTGTGTGTTGGTGCTTCTTTTTCTTACATCAGCGCGGGACCCAGGAATTATTCCACGGAATTCACGTCCACCGGAGGAAGAATTTCGTTATGACTCTTCTGTTTCGGCTGATATTGGAGCAAGACAGACACCGAGCTTTCAATTTCCTCGCACGAGAGAAGTATTAGTCAATGGCCTTCCTGTCAGAGTAAAATATTGTGACACATGCATGCTATATCGTCCTCCTCGTTGTTCCCATTGCTCTATTTGCAACAATTGCGTGGAGCGTTTTGATCATCACTGCCCTTGGGTGGGTCAATGCATTGGACTGCGCAACTACCGATTCTTCTTTATGTTTGTTTCTTCTTCAACTCTTCTTTGCATCTACGTCTTTGCATTTTCTGCCTACTACATCAAGGTCTTGATGGTTGATAATAAGAGCACAGTTTGGAATGCAATGAAAGAATCAATTGCATCTGTGATATTGATGGCGTATTGCTTTGTCTCTCTGTGGTTTGTTGGTGGGCTGACAGGCTTCCATTTGTATCTAATAGGAACAAACCAGACTACATATGAAAATTTCCGGTACAAAGGAGACGACAGGATCAATGTATACAATCTGGGCTGTATAAAAAATTTTTGGGAAGTATTTTGCACTAAAATGGCGCCTTCAAAGAACAACTTTCGAGCTTTGATTCAAGAGGAAGTACAAAGACCTACTGGCCCGCCTCCTATCTCTAGAAATGTCGGACATGAATCAGATGATTTGGGTGGTAATCCACGCTCGAAAGTCGAAGACGATCTTGAGATCGGCGAAGACTTGTTGAAGATCTCACAGAGACGAAATATCGAAGAACTTGACGAGGACATACGGAGTAGAGGAAGCAATGGCCCTCCTCTTAACACTTTAGAGGATGAGTCTGTTGTCGGGTCTGATCATCGAGCCCCCACCATCCGATCCGACGTCAGACATTCGAGTTGGGGGAGGAGAAGTGGGAGCTGGGAAATAGCTCAGGAAGTTCTTGCCAACTCAAATGTCACCGAAAGCAGAAGCTACGCAGCGGCAAGGGACGGGAGGCAATGA 1284 44.63 MAMRVYQVWKGSNKFILGGRLIFGPDTRSLFVTLLLIGAPVITFCVFVARHLRHKFESQNAGYAILGVAIVFTICVLVLLFLTSARDPGIIPRNSRPPEEEFRYDSSVSADIGARQTPSFQFPRTREVLVNGLPVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVSSSTLLCIYVFAFSAYYIKVLMVDNKSTVWNAMKESIASVILMAYCFVSLWFVGGLTGFHLYLIGTNQTTYENFRYKGDDRINVYNLGCIKNFWEVFCTKMAPSKNNFRALIQEEVQRPTGPPPISRNVGHESDDLGGNPRSKVEDDLEIGEDLLKISQRRNIEELDEDIRSRGSNGPPLNTLEDESVVGSDHRAPTIRSDVRHSSWGRRSGSWEIAQEVLANSNVTESRSYAAARDGRQ 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36922003 36925414 + Bda000249.1 Bda13g01422 19553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01422 427 Pfam DHHC palmitoyltransferase 138 263 IPR001594 GO:0016409
Bda13g01422 427 MobiDBLite consensus disorder prediction 304 331 - -
Bda13g01422 427 PANTHER S-ACYLTRANSFERASE 5 426 - -
Bda13g01422 427 ProSiteProfiles DHHC domain profile. 138 188 - -
Bda13g01422 427 MobiDBLite consensus disorder prediction 357 380 - -
Bda13g01422 427 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 5 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01422 K16675 ZDHHC14_18; palmitoyltransferase ZDHHC14/18 [EC:2.3.1.225] - rcu:8283181 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01964 Bda-Chr1:56026064 Bda13g01422 Bda-Chr13:36922003 4.30E-18 dispersed
Bda03g01482 Bda-Chr3:53002960 Bda13g01422 Bda-Chr13:36922003 5.23E-122 dispersed
Bda07g01234 Bda-Chr7:14821404 Bda13g01422 Bda-Chr13:36922003 1.15E-19 dispersed
Bda07g01376 Bda-Chr7:16610301 Bda13g01422 Bda-Chr13:36922003 2.58E-127 dispersed
Bda11g00369 Bda-Chr11:4046489 Bda13g01422 Bda-Chr13:36922003 9.91E-126 dispersed
Bda13g01422 Bda-Chr13:36922003 Bda15g00391 Bda-Chr15:6835794 6.11E-23 dispersed
Bda14g00956 Bda-Chr14:7700527 Bda13g01422 Bda-Chr13:36922003 1.32E-19 dispersed
Bda14g01614 Bda-Chr14:40250537 Bda13g01422 Bda-Chr13:36922003 4.47E-20 dispersed
Bda13g01422 Bda-Chr13:36922003 Bda13g00426 Bda-Chr13:5215126 8.38E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1350 . . . . . . . . . Cmo15g00592 . . . . . . Cpe13g00691 Bhi04g02172 . . . . . . Cla08g00276 Cam08g0717 Cec08g0271 Cco08g0364 Clacu08g0427 . Cre08g0252 Cone4ag1482 Cone7ag1462 . . . . . Cme03g00914 Blo17g00138 Blo18g00149 . Bda13g01422 Bpe02g01102 Bpe14g00435 Bma01g01434 Bma02g00157 . . . . . . Car15g00544 . . . . . . . . . . . . . . . . Lsi08g00248 . Chy03g00271 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002682 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 3 3 2 58