Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01425 AATGATCTGCTTCAGCTATTCCAGCCATTTGGTGTTATAACTAAGCTCGTAATGCTTCGAGCAAAAAATCAGGCTCTTATCCAAATGCAAGATATTCCTGCAGCAGTCAATGCTTTACAATTCTATGCAAACGTCCAACCAACCATAAGGGGAAGAAATGTTTATGTTCAGTTTTCATCTCATCAAGAACTAACTACAATGGAGCAAAATACTCAAGGACGAGGAGACGAGCCAAACCGTATTCTCTTAGTCACAATTCATCATATGCTATATCCAATAACTGTGGAAGTACTTCATCAAGTTTTTTTCCCCCACGGATTTGTGGAAAAGATAGTTACATTTCAGAAGTCAGCTGGTTTTCAGGCCCTTATTCAGTATCAATCACGCCAAAGTGCAGTTTCTGCTAGAACTGCACTGCAGGGGCGTAATATCTATGATGGTTGCTGTCAATTGGACATTCAATTCTCAAATCTTGATGAGTTGCAAGTAAATTACAACAATGAACGATCTAGGGATTTTACAAACCCCAACTTACCCTCTGAACAAAGAGGCAGATCCTCCCAGCCTGGGTATGGGGATGCAGGAGGCATGTATGCCCTTCAAGCATCCGGGCCCAGACCAGGAGGATTTCCGCAGATGGCCAATGCTGCTGCAATTGCAGCTGCCTTTGGAGGAGGTTTGCCTCCTGGCGTTAGCGGGACAAATGACAGGTGTACAGTTCTTGTTTCAAATTTCAATCCTGATAGAATAGATGAAGATAAGCTCTTCAACCTGTTCTCCATTTATGGCAACATCATAAGAATTAAACTCCTCCGAAATAAACCAGATCACGCTCTTGTCCAGATGGGAGATGGCTTCCAGGCTGAATTAGCAGTTCACTTCTTAAAGGGAGCATTATTGTTCGGAAAAAGATTGGAGGTCAACTTCTCCAAATATCCAAATATCACTCAAGGGGCCGATACACACGAGTATGTAAATTCAAATCTTAACCGCTTCAATCGTAATGCTGCAAAGAACTATCGATACTGTTGTTCCCCGACAAAGATGATCCATATTTCCTCCCTACCCCAAGAAGTCACTGAGGAGGAGATTGTGAACCACCTTGAGGAGCATGGAGCCATTGTCAACACCAAGCTATTTGAGATGAATGGGAAGAACCAGGCCTTGGTTATGTTTGAAACCGAAGAGCAGGCCACTGAGGCCCTCGTCTGCAAGCATGCTACCACAATCGGTGGCTCAATAATGCGGATTTCCTTTTCGCAATTGCAGGGAATC 1275 43.53 NDLLQLFQPFGVITKLVMLRAKNQALIQMQDIPAAVNALQFYANVQPTIRGRNVYVQFSSHQELTTMEQNTQGRGDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPSEQRGRSSQPGYGDAGGMYALQASGPRPGGFPQMANAAAIAAAFGGGLPPGVSGTNDRCTVLVSNFNPDRIDEDKLFNLFSIYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKYPNITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHISSLPQEVTEEEIVNHLEEHGAIVNTKLFEMNGKNQALVMFETEEQATEALVCKHATTIGGSIMRISFSQLQGI 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36947009 36962055 - Bda032810 Bda13g01425 19556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01425 425 MobiDBLite consensus disorder prediction 169 198 - -
Bda13g01425 425 Gene3D - 81 183 IPR012677 -
Bda13g01425 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 422 IPR000504 GO:0003723
Bda13g01425 425 CDD RRM4_PTBPH3 341 419 - -
Bda13g01425 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 312 IPR000504 GO:0003723
Bda13g01425 425 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 424 - -
Bda13g01425 425 Gene3D - 232 329 IPR012677 -
Bda13g01425 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 413 IPR000504 GO:0003723
Bda13g01425 425 SUPERFAMILY RNA-binding domain, RBD 1 74 IPR035979 GO:0003676
Bda13g01425 425 Pfam RRM-like domain 77 156 IPR021790 -
Bda13g01425 425 SUPERFAMILY RNA-binding domain, RBD 236 419 IPR035979 GO:0003676
Bda13g01425 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 323 - -
Bda13g01425 425 Gene3D - 330 424 IPR012677 -
Bda13g01425 425 Gene3D - 1 80 IPR012677 -
Bda13g01425 425 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 424 - -
Bda13g01425 425 MobiDBLite consensus disorder prediction 169 187 - -
Bda13g01425 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 61 IPR000504 GO:0003723
Bda13g01425 425 SUPERFAMILY RNA-binding domain, RBD 78 179 IPR035979 GO:0003676
Bda13g01425 425 SMART rrm1_1 83 152 IPR000504 GO:0003723
Bda13g01425 425 SMART rrm1_1 239 308 IPR000504 GO:0003723
Bda13g01425 425 SMART rrm1_1 349 418 IPR000504 GO:0003723
Bda13g01425 425 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 2 421 IPR006536 GO:0003723|GO:0005634|GO:0006397
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01425 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - jre:108984238 782.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00863 Bda13g01425 CCT
Bda01g00863 Bda13g01425 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00153 Bda-Chr5:6383583 Bda13g01425 Bda-Chr13:36947009 1.54E-06 dispersed
Bda13g01425 Bda-Chr13:36947009 Bda13g01695 Bda-Chr13:40322884 6.28E-07 dispersed
Bda01g00863 Bda-Chr1:41345413 Bda13g01425 Bda-Chr13:36947009 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41