Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01432 ATGGATACTCGAGCTCCGCATGAGGAAGCAGAAGATCAAGGGGAGGTTTTCCTTGATGAGTCCGACATCATCCAAGAAGTTGTAGTTGATGATGAAGATCTTCCAGACGCTGAAGACGAAGCAAGCTCTGATGCTGAATTCTTTGAGGACTCCGATGATTCTATACATACATTCACCGGTCATACTGGTGAAGTTTACACCGTTGCTTGTAGCCCGACTGATTCGACATTAGTGGCTACTGGTGGTGGAGATGACAAAGGATTTATTTGGAAAATCGGTCATGGAGATTTTGCCTCTGAGCTTAATGGTCATAAAGATTCTGTTTCTAGTGTAGCATTTAGTGCTGATGGTCAGCTACTTGCATCAGGAAGCTTTGATGGACTCATCCATATTTGGGATATTTCATCAGGATGTCTTAAGTGTACCCTAGAAGGTCCTGACGGAGGGATTGAGTGGATTAGGTGGCATCCTAGAGGACACTTGATCTTGGCTGGTTCTGAGGATTCTACTGTTTGGATGTGGAATGCAGACAAAGCAACGTATCTCAATGTATTTTCTGGTCATGGTGCTAGTGTTACTTGTGGTGAATTTACTCCTGATGGTAAAACAATTTGCTCTGGTTCTGACGACGCGAGTTTAAGAATATGGAATCCAAGAAGTGGTGAGAATATTCACGTCATAAAAGGTCATCCTTATCATACTGAAGGACTAACATGTATGGCGATTAGCTCTGATTCGACCCTTGCTATTACTAGTTCAAAGGATGGCTCTGTCCATATTGTGAATATAACAACCGGGAAGGTTGTCACTTCTCTTGTTTCTCATTCAGATTCAATCGAGTGTGTTGGGATTGCTCCAAGCAACTCTCCTTGGGCTGCAACTGGAAGCATGGATAAGAAGCTTATCATCTGGGATCTACAGCATTCAATGCCTCGTTGTACATGCGAGCACGAGGATGGAGTGACGTGCTTGACTTGGATCGGGACTTCGAAATACATAGCAAATGGATGTGCTGATGGTAAAATTCGAATTTGGGACAGTCTTTCCGGTGATTGTCTTAAAACTTATGCTGGCCATAGCAGTGTGATTCAATCCCTGGCGTTATCCTCAAACCTTGATTACCTTGTTTCCGTTTCCCTCGACGAGACTGCCCGTGTATTTGAGGTTGCTGAGTATCATTAG 1182 43.74 MDTRAPHEEAEDQGEVFLDESDIIQEVVVDDEDLPDAEDEASSDAEFFEDSDDSIHTFTGHTGEVYTVACSPTDSTLVATGGGDDKGFIWKIGHGDFASELNGHKDSVSSVAFSADGQLLASGSFDGLIHIWDISSGCLKCTLEGPDGGIEWIRWHPRGHLILAGSEDSTVWMWNADKATYLNVFSGHGASVTCGEFTPDGKTICSGSDDASLRIWNPRSGENIHVIKGHPYHTEGLTCMAISSDSTLAITSSKDGSVHIVNITTGKVVTSLVSHSDSIECVGIAPSNSPWAATGSMDKKLIIWDLQHSMPRCTCEHEDGVTCLTWIGTSKYIANGCADGKIRIWDSLSGDCLKTYAGHSSVIQSLALSSNLDYLVSVSLDETARVFEVAEYH 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37028995 37033134 - Bda000261.2 Bda13g01432 19563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 137 IPR001680 GO:0005515
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Bda13g01432 393 SMART WD40_4 265 305 IPR001680 GO:0005515
Bda13g01432 393 SMART WD40_4 178 217 IPR001680 GO:0005515
Bda13g01432 393 SMART WD40_4 51 91 IPR001680 GO:0005515
Bda13g01432 393 SMART WD40_4 136 175 IPR001680 GO:0005515
Bda13g01432 393 SMART WD40_4 220 262 IPR001680 GO:0005515
Bda13g01432 393 SMART WD40_4 308 346 IPR001680 GO:0005515
Bda13g01432 393 SMART WD40_4 349 388 IPR001680 GO:0005515
Bda13g01432 393 SMART WD40_4 94 133 IPR001680 GO:0005515
Bda13g01432 393 ProSitePatterns Trp-Asp (WD) repeats signature. 120 134 IPR019775 -
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 100 IPR001680 GO:0005515
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 307 IPR001680 GO:0005515
Bda13g01432 393 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 52 379 IPR011047 -
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Bda13g01432 393 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 5 391 - -
Bda13g01432 393 Pfam Anaphase-promoting complex subunit 4 WD40 domain 306 366 IPR024977 -
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 393 IPR001680 GO:0005515
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Bda13g01432 393 MobiDBLite consensus disorder prediction 1 21 - -
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 137 - -
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 355 IPR001680 GO:0005515
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 185 222 - -
Bda13g01432 393 CDD WD40 100 388 - -
Bda13g01432 393 Gene3D - 51 391 IPR015943 GO:0005515
Bda13g01432 393 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 5 391 - -
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 346 - -
Bda13g01432 393 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Bda13g01432 393 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Bda13g01432 393 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 175 - -
Bda13g01432 393 Pfam WD domain, G-beta repeat 100 133 IPR001680 GO:0005515
Bda13g01432 393 Pfam WD domain, G-beta repeat 182 217 IPR001680 GO:0005515
Bda13g01432 393 Pfam WD domain, G-beta repeat 267 305 IPR001680 GO:0005515
Bda13g01432 393 Pfam WD domain, G-beta repeat 54 87 IPR001680 GO:0005515
Bda13g01432 393 Pfam WD domain, G-beta repeat 142 175 IPR001680 GO:0005515
Bda13g01432 393 Pfam WD domain, G-beta repeat 221 260 IPR001680 GO:0005515
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 307 - -
Bda13g01432 393 ProSitePatterns Trp-Asp (WD) repeats signature. 292 306 IPR019775 -
Bda13g01432 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 393 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01432 K24725 AAMP; angio-associated migratory cell protein - csv:101211245 635.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00001 Bda-Chr4:2001 Bda13g01432 Bda-Chr13:37028995 2.23E-26 dispersed
Bda04g00237 Bda-Chr4:17695845 Bda13g01432 Bda-Chr13:37028995 2.05E-26 dispersed
Bda04g00634 Bda-Chr4:54972794 Bda13g01432 Bda-Chr13:37028995 0 dispersed
Bda04g00636 Bda-Chr4:55012942 Bda13g01432 Bda-Chr13:37028995 0 dispersed
Bda13g01432 Bda-Chr13:37028995 Bda15g00066 Bda-Chr15:2339049 2.61E-11 dispersed
Bda13g01432 Bda-Chr13:37028995 Bda04g00146 Bda-Chr4:3969533 1.94E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1306 . . . . . . . . . . . Cma09g01283 . . . . . . . . . . . . Cla08g00264 Cam08g0704 . Cco08g0349 Clacu08g0411 . Cre08g0236 . . . . . . . . . . . Bda13g01432 . . . . . . Cmo09g01240 . . . Car09g01096 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004733 3 1 1 2 1 1 2 2 0 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 3 1 2 42