Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01440 ATGTTTGAGGGGAGCATCCCATTTCGCTCACCCGTTTGTCCGTCCCCGGCTCCGGACCCTCTCTTCTCACTTCCGGCGAGGGCTCCGCGAAACAAGCCAGGCTTGAGGATGAAACCGATTTATTGGAGGAATACAACGTCGAAGCTTGGTTCTGTTGCAGTTCCTTCGAATTCTACTGCTAGGGCTCTCAATCTGACAGTCGGTGGACAGTGGGTGCGAACCGTTGACGAGAATGAGTTGAGAAAGAAACGGGTGTTTTTCTTGGATGTAAACCCACTCTGCTATGCCGGTAGTAGACCTAGCTTAAGCTCGTTTATTCATTGGGTCTCCCTTTTCTTCTGCCAAGTTAGCCGTACTGACCCTGTAATTGCAGTTCTTGATGGGGAAGGGGGTAATGAGTATCGAAGGCAAATACTACCATCATATAAAGCACATAGAAGTAAATTCTCAAGACGTCCATCGACTTCAATCAGACCTTCCCATGGTGTTTTTAGAAATTCACATCAAGTTATCATTAATGTCCTCGAAGAATGCAACGTGCCAGTCATAAAAATTGAAGGTCATGAAGCCGATGATGTCGTTGCGACACTTGTAGAACAAGTTTTAGATAGAGGATACAGAGTGGTGATTGGATCTCCAGATAAAGATTTTAAGCAACTCATTTCAGAAGATGTTCAAATTGTTATGCCTTTGGCTGACCTAAATAGGTGGTCTTTTTACACCTTAAAGCATTACCTGGCTCAGTATAAGTGTGATCCAAGCTCGGACTTGAGCCTCAGATGCATACTCGGCGATGAGGTTGACGGTGTTCCGGGAATTCAGCACGTTGCTCCTGGGTTTGGGCGAAAAAACTGCGGTAAAGCTTTTACAGAAGCATGGTTCATTGGAAAATTTACTGAATACGGCCGCCATAAGAACTGTTGGACGACAATATGCACAAGATGCTCTTGTAAAGTACGCCGACTATCTTCGGAGAAACCAAAAAGTACTTGCTCTAAGAAGGGATGTTGA 1011 45.1 MFEGSIPFRSPVCPSPAPDPLFSLPARAPRNKPGLRMKPIYWRNTTSKLGSVAVPSNSTARALNLTVGGQWVRTVDENELRKKRVFFLDVNPLCYAGSRPSLSSFIHWVSLFFCQVSRTDPVIAVLDGEGGNEYRRQILPSYKAHRSKFSRRPSTSIRPSHGVFRNSHQVIINVLEECNVPVIKIEGHEADDVVATLVEQVLDRGYRVVIGSPDKDFKQLISEDVQIVMPLADLNRWSFYTLKHYLAQYKCDPSSDLSLRCILGDEVDGVPGIQHVAPGFGRKNCGKAFTEAWFIGKFTEYGRHKNCWTTICTRCSCKVRRLSSEKPKSTCSKKGC 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37152359 37155727 - Bda000273.1 Bda13g01440 19571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01440 336 Pfam 5'-3' exonuclease, N-terminal resolvase-like domain 109 229 IPR020046 GO:0003677
Bda13g01440 336 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 30 286 - -
Bda13g01440 336 SMART 53exo3 83 297 IPR002421 GO:0003677
Bda13g01440 336 SUPERFAMILY PIN domain-like 83 249 IPR029060 -
Bda13g01440 336 CDD PIN_53EXO 120 230 - -
Bda13g01440 336 Gene3D - 101 252 - -
Bda13g01440 336 PANTHER DNA POLYMERASE I 30 286 IPR002298 GO:0003887|GO:0006261
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01440 - - - qsu:112017372 340.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00413 Bda-Chr4:51696933 Bda13g01440 Bda-Chr13:37152359 6.63E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1397 . . . . . . . . . . . . . . Sed03g3083 . . Bhi04g02527 Tan11g0060 Cmetu03g2067 . Hepe02g3457 . Lcy10g2348 . . . . . . . . . . . . . . . Blo17g00151 . . Bda13g01440 . Bpe14g00416 . Bma02g00184 . . . . . . . . . . . . . . . . Cla11g00787 Cam11g0821 Cec11g0801 Cco11g0806 Clacu11g1037 Cmu11g0898 Cre11g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011265 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31