Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01447 ATGCAGAGGGTGGGGGTGGTGGTTTTGGTTCTGTCAATCTTAGAATTGACCTCGCGTTCTTCTTCTTCTTCGTCCTTGGATGGCGAACGGATTTTCAGGGCGAACGGGAAGGTGTTGGAGCTTGATGATTCCAATTTTGATTCCGCTATTTCATCTTTTGATTTCATCTTGGTCGACTTCTATGCTCCCTGGTGTGGCCACTGCAAGCGTCTTTCTCCGCAGTTAGATGCTGCTGCTCCTTTGCTTGCTGGCTTGAAGGAACCCGTAGTGATTGCAAAAGTAAATGCAGACAAGTTTAAGGTTCTTGGAAAGAAATATGACGTTGATGCATATCCTACTTTGAAGATCTTTGTGCATGGCGTCCCTAATGACTATCATGGGCCCAGAAAACCAGATTTACTTGTAAGATACCTGAAGAAATTTGTTGCTCCTGATGTTTCCATTCTTGATTCAGACTCCGCTATCAAGGACTTTGTCGAAACATCTGGCACTTTTTTTCCCATCTTCATCGGCTTTGGCTTGAGTGAGTCTATTATCTCAGAGTTAGCCGTCAAGTACAAGAAAAAGGCATGGTTTTCTGTGGCTAAGGATTTCTCTGAGGAGATTATGATCTCGTACAATTTTGACAAAGTTCCTGCGTTAGTATCTATTCATCCCGCCTACGACAATGAGCAGAACATTTTTTATGGTCCCTTCGAAGATCGATTCTTGGAAGAGTTTATCAAACAAAGTTTTCTCCCTCTTGTTGTACCAATAAATCATGACACTCTAAAGCTATTGAAAGAAGAGGAAAGGAAAATTGTTCTTGCGCTCGTGGAAGACGAGAACGAAGATGAGACAAAAAACCTTGTTAAGCTACTAAAGACCAGTGCATATGCTAATCGTGACTTGATATTTGGGTACGTCGGGATCAAGCAGTGGGCAGAGTTTGTTGAAACATTCAGTGCTAATAAGAAGACAACACTACCAAAATTGGTTGTTTGGGATGGAAACGAAGAATATTTATCGGTTATTGGCTTCGAAACCATTACAGAGGATGACAAAGTGACCCAGGTCTCGAAGTTCCTCGAAGGATACAGGGAAGGAAGAACTGTAGAAAATAGAATTGCTGGTAAATCAGTTCTCGGCTACATCATTTGGATCGGGGCTGTGTATATTATTGTCTTTATTGTCGGAGTTTGGATGGTTATTAGGAAGATCAATCATGGGGACGAGCCGCCTCCTCAGGTAGGTACAGAACCTGTTGATCCAGCCCCGGGTTCTCCTTCTAAGGTTGTGAACAGCGATCATAAAAGTGGAGAGAAAGAAGATTAA 1314 42.54 MQRVGVVVLVLSILELTSRSSSSSSLDGERIFRANGKVLELDDSNFDSAISSFDFILVDFYAPWCGHCKRLSPQLDAAAPLLAGLKEPVVIAKVNADKFKVLGKKYDVDAYPTLKIFVHGVPNDYHGPRKPDLLVRYLKKFVAPDVSILDSDSAIKDFVETSGTFFPIFIGFGLSESIISELAVKYKKKAWFSVAKDFSEEIMISYNFDKVPALVSIHPAYDNEQNIFYGPFEDRFLEEFIKQSFLPLVVPINHDTLKLLKEEERKIVLALVEDENEDETKNLVKLLKTSAYANRDLIFGYVGIKQWAEFVETFSANKKTTLPKLVVWDGNEEYLSVIGFETITEDDKVTQVSKFLEGYREGRTVENRIAGKSVLGYIIWIGAVYIIVFIVGVWMVIRKINHGDEPPPQVGTEPVDPAPGSPSKVVNSDHKSGEKED 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37181139 37184857 - Bda000280.1 Bda13g01447 19578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01447 437 PRINTS Thioredoxin family signature 64 73 - -
Bda13g01447 437 PRINTS Thioredoxin family signature 107 118 - -
Bda13g01447 437 PRINTS Thioredoxin family signature 56 64 - -
Bda13g01447 437 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-2 13 437 - -
Bda13g01447 437 ProSitePatterns Thioredoxin family active site. 57 75 IPR017937 -
Bda13g01447 437 ProSiteProfiles Thioredoxin domain profile. 15 143 IPR013766 -
Bda13g01447 437 SUPERFAMILY Thioredoxin-like 32 143 IPR036249 -
Bda13g01447 437 Pfam Thioredoxin 38 139 IPR013766 -
Bda13g01447 437 Pfam Thioredoxin-like domain 182 339 - -
Bda13g01447 437 Coils Coil 269 289 - -
Bda13g01447 437 CDD PDI_a_family 39 138 - -
Bda13g01447 437 PANTHER PROTEIN DISULFIDE ISOMERASE 13 437 - -
Bda13g01447 437 MobiDBLite consensus disorder prediction 405 437 - -
Bda13g01447 437 Gene3D Glutaredoxin 234 367 - -
Bda13g01447 437 Gene3D Glutaredoxin 21 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01447 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - jre:109011811 583.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00628 Bda-Chr7:7631965 Bda13g01447 Bda-Chr13:37181139 3.39E-23 dispersed
Bda13g01447 Bda-Chr13:37181139 Bda14g01414 Bda-Chr14:17676647 2.49E-11 dispersed
Bda01g01464 Bda-Chr1:50557142 Bda13g01447 Bda-Chr13:37181139 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1206 . . . . . . . Blo17g00155 Blo18g00166 . Bda13g01447 . Bpe14g00408 . Bma02g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006012 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38