Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01449 ATGGGAGTACACTATGCCTTCAAAACGGCTCTAAAGGTTCAACCTTTCTTTTCCCCGCGCCTCTGCAACAGCTTCTCCCGCAAGTTTCCGACTTTTTTCGGGGCACCCAAAGCCGTAGCCTGGGCCAGAAGCTTGGGGATTTTGCGTTGTAGAACAATGGCGGTTTCTCAGGTTCCGGTCGTCCTAGTGAAAGAGAATATCGAACTGACTGAAATCGAGGGGAAGATTTTCGACAGACTTCTTGCCACTCTTCGTCACTTTGGCCTCCCATATGAGCTCCGAGTTGCCGGCGGTTGGGTTCGCGACAAGCTTATTGGGAAAGATTGCTATGATATTGATATTGCTCTAGACAATATGTTGGGCAGCGAATTCGTCGAAAAGGTCAGGGAATACTTGTTGTCTGTGGGAGAAGAGGCTCAAGGGATCGCAATTATTCCCAGTAATCCTGATCAGTCGAAACATTTAGAGACAGCGAGGATGCGCATTTTTGACGTATGGATTGATTTTGTGAACTTGCGGAGTGAAGAGTACAGTAATAATAATAGCCGTATACCAACTAAACAAAAATTTGGAACGGCTGAAGAGGATGCGTATAGAAGGGATTTAACAATCAACAGCTTGTTCTACAATATTAATACCGGGTTAGTTGAAGACTTCACTGAAAGAGGAATTTCAGATCTGAAGTTTGGCAAAATTGTAACTCCATTACCTCCAAAAGAAACGTTTTTAGATGATCCACTCCGAGTTCTTCGAGCCATCCGATTTGGTGCGAGATTTGGATTTACGCTAGATGACGGACTAAAAGAAGCTGCTTCATGCGATGACGTAAAAAATGCTCTTTCTGCTAAAATTAGCAGAGAGCGAATTGGAACCGAAATTGATCTTATGATATCTGGGAACCAACCAGTTGATGCAATGAGACACGTTGATCATTTGACGATATTTTGGGTCATTTTCAGCTTACCTCCTAAGATTGAGCCTGCAGTACTAGAGAGATGTGATGGACAACCATTACTTCCCCATATTAGGCTTTGCGTTGCTTGCTTGGATGCTGCGTGGAAGCTCATTCCATTAATTGGAATATCGATCTTCAATAATGAACAGAAAAGGCTGTGTTTATATGCGGCTTTATTTCTCCCATTTAGAAAAACCAGTTATAAAGATCACAAGTCCAAAAAGATTTCTGTTGTACACTACATTTTCAGGAATTCCCTCAAGCTAAAAGTCAGCGATGCGGAAACTGTTGTTAATGTACATCGGGCGTCAGAGAAGTTCTTGTCTTTGATTGATCGTCTTATATCTAACAAAGAGAATCAACTTACTGAAGACGATGTGGGAAAAGAATTTGTAGATATTCCTCTTTCCTCAAGTCTTCGAGTATCGACTGGATTTCTTCTACGTGAAATCAAGGACTTTTGGCGAGTGGCCATGTTCATTTCTACGTTGTTATATCCCGTCGACATTGATCACACTGAAGACTTCTTAAATGGGCGCTTTGAATTGGAGCGGCGAAGTCGTTTATTCAATAGTGTTGAGAATGCAATTATGAAATTAGGTGTTGATAAAGTATGGGAACTAAAACCTCTGCTAAATGGGAGGGAGATCATGAATATTTTAGGGCTTAAATCTGGAGGACCAGTTGTTAGTGAATGGCAACAAAAGCTGATGGCGTGGCAGCTTGCACACCCGTCAGCAACTGCAGAAGAATGCGTCGATTGGATGAAACAAACCGACTCAAAACGCTTAAAAATGGACTGTAGCTAA 1764 42.18 MGVHYAFKTALKVQPFFSPRLCNSFSRKFPTFFGAPKAVAWARSLGILRCRTMAVSQVPVVLVKENIELTEIEGKIFDRLLATLRHFGLPYELRVAGGWVRDKLIGKDCYDIDIALDNMLGSEFVEKVREYLLSVGEEAQGIAIIPSNPDQSKHLETARMRIFDVWIDFVNLRSEEYSNNNSRIPTKQKFGTAEEDAYRRDLTINSLFYNINTGLVEDFTERGISDLKFGKIVTPLPPKETFLDDPLRVLRAIRFGARFGFTLDDGLKEAASCDDVKNALSAKISRERIGTEIDLMISGNQPVDAMRHVDHLTIFWVIFSLPPKIEPAVLERCDGQPLLPHIRLCVACLDAAWKLIPLIGISIFNNEQKRLCLYAALFLPFRKTSYKDHKSKKISVVHYIFRNSLKLKVSDAETVVNVHRASEKFLSLIDRLISNKENQLTEDDVGKEFVDIPLSSSLRVSTGFLLREIKDFWRVAMFISTLLYPVDIDHTEDFLNGRFELERRSRLFNSVENAIMKLGVDKVWELKPLLNGREIMNILGLKSGGPVVSEWQQKLMAWQLAHPSATAEECVDWMKQTDSKRLKMDCS 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37195668 37201304 - Bda000282.1 Bda13g01449 19580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01449 587 Pfam Poly A polymerase head domain 93 232 IPR002646 GO:0003723|GO:0006396|GO:0016779
Bda13g01449 587 PANTHER TRNA-NUCLEOTIDYLTRANSFERASE 56 585 - -
Bda13g01449 587 Gene3D - 232 449 - -
Bda13g01449 587 CDD NT_ClassII-CCAase 79 228 IPR002646 GO:0003723|GO:0006396|GO:0016779
Bda13g01449 587 Gene3D Beta Polymerase, domain 2 62 228 IPR043519 -
Bda13g01449 587 SUPERFAMILY Poly A polymerase C-terminal region-like 232 576 - -
Bda13g01449 587 SUPERFAMILY Nucleotidyltransferase 72 228 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01449 - - - jre:109006136 768.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01449 Bda-Chr13:37195668 Bda15g00695 Bda-Chr15:10360796 3.86E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00156 . . Bda13g01449 . Bpe14g00407 . Bma02g00192 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010577 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 30