Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01470 ATGATCAACGATGGTTGCAGCCCTGACATAGTGACGTACAGCATTATGGTTGATATCCTCTGCAAGGCCGGGAGAGTTGATGAAGCCGTTGAGATTGTTAACGAAATGAATTCTAAGTCATTCACCCCTACATCTTTCACTTATAGTGTTTTGATCCATACCTATGGGACAGAAAATCGAATAGAAGATGCTGTCAGAACATTCTCGGAGATGGAAAAAGATGGAGTTATGGCTGATGTAGCTGTTTATAACGCATTGATTAGCGCTTTTTGCAAAGCAAACAAGACGAAGAATGTCAATAGAGTCATGCATGAGATGGAAAATAAAGGGGTCAAGCCCAATTCTCGAACGTTTAATATCGTTCTTCACAATTTGATCGACCGTGGGGAGACGGATGAAGCCTTCACCGTCTTTCGCAAGATGATCAAGATTTGCGATCCCGATTCGGACACATATACGATGATTGTGAAGATGTTTTGTGATAAGAATCAATTAAAGGAGGCTCGTAAAGTTTGGAAGTATATGAGGTCTAAGAAGTTTGTTCCTAGCATGCATACTTATTCTGTGCTGATAAATGGGTTGTGCAAGATGGGTGACGCCTTGAAAGCTAGTGTGATTTTGGATGAGATGATAGAGAAGGGAATTCGACCACCAAGTGCGACGTTCGGAAGGCTTCGACAGTTGCTTTTGAAAGACGGTAGAGAAGATGTTCTTAATTTTCTTCAAGGAAAAATGAATCTACTTGTGCAGGAGCCGTTGTGCGATTGA 768 41.54 MINDGCSPDIVTYSIMVDILCKAGRVDEAVEIVNEMNSKSFTPTSFTYSVLIHTYGTENRIEDAVRTFSEMEKDGVMADVAVYNALISAFCKANKTKNVNRVMHEMENKGVKPNSRTFNIVLHNLIDRGETDEAFTVFRKMIKICDPDSDTYTMIVKMFCDKNQLKEARKVWKYMRSKKFVPSMHTYSVLINGLCKMGDALKASVILDEMIEKGIRPPSATFGRLRQLLLKDGREDVLNFLQGKMNLLVQEPLCD 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37610303 37611070 - Bda000313.1 Bda13g01470 19601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01470 255 PANTHER OS03G0761300 PROTEIN 1 252 - -
Bda13g01470 255 Gene3D Tetratricopeptide repeat domain 106 252 IPR011990 GO:0005515
Bda13g01470 255 Gene3D Tetratricopeptide repeat domain 1 105 IPR011990 GO:0005515
Bda13g01470 255 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Bda13g01470 255 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Bda13g01470 255 SUPERFAMILY TPR-like 11 213 IPR011990 GO:0005515
Bda13g01470 255 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 252 - -
Bda13g01470 255 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 144 IPR002885 -
Bda13g01470 255 Pfam PPR repeat family 79 125 IPR002885 -
Bda13g01470 255 Pfam PPR repeat family 147 196 IPR002885 -
Bda13g01470 255 Pfam PPR repeat 4 36 IPR002885 -
Bda13g01470 255 Pfam PPR repeat 41 72 IPR002885 -
Bda13g01470 255 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Bda13g01470 255 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Bda13g01470 255 TIGRFAM PPR: pentatricopeptide repeat domain 117 143 IPR002885 -
Bda13g01470 255 TIGRFAM PPR: pentatricopeptide repeat domain 46 79 IPR002885 -
Bda13g01470 255 TIGRFAM PPR: pentatricopeptide repeat domain 151 183 IPR002885 -
Bda13g01470 255 TIGRFAM PPR: pentatricopeptide repeat domain 185 217 IPR002885 -
Bda13g01470 255 TIGRFAM PPR: pentatricopeptide repeat domain 11 44 IPR002885 -
Bda13g01470 255 TIGRFAM PPR: pentatricopeptide repeat domain 82 115 IPR002885 -
Bda13g01470 255 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01470 - - - mcha:111011765 383.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01470 Bda-Chr13:37610303 Bda12g00662 Bda-Chr12:31965534 3.27E-13 dispersed
Bda13g01470 Bda-Chr13:37610303 Bda13g01350 Bda-Chr13:35845800 2.80E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32