Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01473 ATGTCTACTCGGAATTCGGTGACGAAGCAGTCTAGCAGGGAGAGCTCAAGTAAAAAGGCCATGAAGATCAACGTACCGAGGAAGCGTCTTCCTCTCATCGACGTCACTAACCAACGAAGTGGCTCGCAAAATGTCACGCGGACTTCTGTCTCTTCGAGCAAATTTATGGTGCCCTGTGGTGCTAAAAGTTTGAAGACGAAGGACCCTTATGGTGGTACTCTAAGGAAAATGGACTCTGAGAATGTGTTGCCATCACCCTTGAATCTGGAATCAAACAAATTAATTTCTCTCAAGAACAATCTGGAAAGTGATCAATCTACTGGTAAAATTGTTACAGTATCTCCACAAGAAGTTACATTTATGGGTGCTAGCAGTTCAGTTCACATTTCAGCAAGCTTAGGCATGTCTCCATGTAGATCAGTAACTGATTCAACTTCTTTGGTTGAGAACATGTCTACTCGTGGTTCTTTAAAGAGTCCAGGATTTGAAGACAGTGATGATGAAAATTCTCTGTCAGTTACATCTCTTGAAAGGAAGACAACTACAACTACAAGTTTGATCGTATCTGCAAATTCAGCAACATCAGAAAATATCTGCAAAGAAGACGTTCTCGTAGACATTGGAACATTTGATGCAATTGTTGATGTTGATAAAAATTTGATGGACTCACAACTCTGTCCATTCGTTGCCTGTGATATCTATGACTACCTACATGCATCCGAGGGGAAGCTTACGGCTGTTCCCCCTCATCACGCAAAGAAGCGGGCGCCTCTCGCTAACCTCACTAATTTGAAGGCTGCATCGCGAAGCTCTGTCCCATCTTCTACTATGGTACCATGCGTTACAAAAATTTCCAAGGCTAAGAAACGTTCCCCTGGAAGAAATGGTGTCGCAGGCCTACCAGGGAATGCTATGGTCAATGTGAAATCAACTTCAGTGGCTCCTCTTAAATCTACAACTTTACTGAAAAGTGAAGCAATCGTTCCTCCCTCTGCTGTCATTCTTCCTCCGAGCAGCATGGATGTGTCTCCAAGTAAATCAGATGGAATTTCTGTCTCTTTAGATGAGACAATGTCTACTTCTGATTCATTTAAGAGTCCTGAAGTTGAGTATGTAGACAACAATGATGTATCGATGGTTGATTCAATCGAGAGGAAAACATTTAGCATTCTCCACATTTCAGACCACAATGTAGAAACCAAAGGTCCGAATATTTGCAGCAGAGATATGCTAGATGAAAAATTCGTGGATGTTGATAATGATTACGGGGATCCCAAGAAGTGTGCTACCATTGCTTGTGATATTTACATGCATTTGCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGATTTCATGGAGAGAATTCAGAAAGATATAAATGCGAACATGCGAGCAATTTTAGTCGATTGGCTTGTGGAGGTAGCAGAAGAATACAGGCTAGTCCCTGATACACTCTATCTGACTGTAAATTACATCGATCGCTATCTCTCTGGGAATGCTATGGACAGACAAAGATTACAGTTGCTTGGTGTTGCTTCAATGATGATCGCATCGAAGTACGAGGAGATTTGTGCGCCACAGGTGGAAGAGTTTTGTTACATTACAGATAATACGTACTTCAAGGAAGAGGTTTTGCAAATGGAGTCTTCTGTTTTGAATTACTTGAAGCGATTTGTTCGAGCTGCTCAAGGTATTGATGAGGTTCCAGCAATGCAAATGGAATGCTTGGCTAACTACCTGGCCGAGCTGAACTCCACTTTGCAGCATTACACTCTTTACCAGCCTTGTGATCTAAGAGATTGTGTGAAGGACTTGCATAAATTGTGCTGTAATTCTCCTACTTCTACCCTTCCAGCTATTAGGGAGAAATACAGCCAACACAAGTACAAACAAGTGGCAAAAAAGCATTGCCCTCCAATTGTGCCTCCTGATTTTTTTTACAATCAAACCCACTAA 1959 42.01 MSTRNSVTKQSSRESSSKKAMKINVPRKRLPLIDVTNQRSGSQNVTRTSVSSSKFMVPCGAKSLKTKDPYGGTLRKMDSENVLPSPLNLESNKLISLKNNLESDQSTGKIVTVSPQEVTFMGASSSVHISASLGMSPCRSVTDSTSLVENMSTRGSLKSPGFEDSDDENSLSVTSLERKTTTTTSLIVSANSATSENICKEDVLVDIGTFDAIVDVDKNLMDSQLCPFVACDIYDYLHASEGKLTAVPPHHAKKRAPLANLTNLKAASRSSVPSSTMVPCVTKISKAKKRSPGRNGVAGLPGNAMVNVKSTSVAPLKSTTLLKSEAIVPPSAVILPPSSMDVSPSKSDGISVSLDETMSTSDSFKSPEVEYVDNNDVSMVDSIERKTFSILHISDHNVETKGPNICSRDMLDEKFVDVDNDYGDPKKCATIACDIYMHLRASEAKKRPSTDFMERIQKDINANMRAILVDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMDRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKRFVRAAQGIDEVPAMQMECLANYLAELNSTLQHYTLYQPCDLRDCVKDLHKLCCNSPTSTLPAIREKYSQHKYKQVAKKHCPPIVPPDFFYNQTH 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37627034 37636121 - Bda000316.2 Bda13g01473 19604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01473 652 Gene3D - 586 642 - -
Bda13g01473 652 PANTHER CYCLINS 249 584 IPR039361 -
Bda13g01473 652 PANTHER CYCLINS 585 649 IPR039361 -
Bda13g01473 652 Pfam Cyclin, N-terminal domain 434 557 IPR006671 -
Bda13g01473 652 PANTHER CYCLIN-A1-1 249 584 - -
Bda13g01473 652 PANTHER CYCLIN-A1-1 585 649 - -
Bda13g01473 652 SUPERFAMILY Cyclin-like 423 557 IPR036915 -
Bda13g01473 652 SUPERFAMILY Cyclin-like 552 640 IPR036915 -
Bda13g01473 652 SMART Cyclin_C_2 550 639 IPR004367 -
Bda13g01473 652 MobiDBLite consensus disorder prediction 152 171 - -
Bda13g01473 652 MobiDBLite consensus disorder prediction 1 23 - -
Bda13g01473 652 MobiDBLite consensus disorder prediction 1 19 - -
Bda13g01473 652 ProSitePatterns Cyclins signature. 465 496 IPR006671 -
Bda13g01473 652 Gene3D - 434 585 - -
Bda13g01473 652 SMART cyclin_7 470 554 IPR013763 -
Bda13g01473 652 CDD CYCLIN 464 553 IPR013763 -
Bda13g01473 652 Gene3D - 448 557 - -
Bda13g01473 652 PANTHER CYCLIN-A1-1 20 243 - -
Bda13g01473 652 Pfam Cyclin, C-terminal domain 584 637 IPR004367 -
Bda13g01473 652 PANTHER CYCLINS 20 243 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01446 Bda-Chr1:50385131 Bda13g01473 Bda-Chr13:37627034 2.62E-17 dispersed
Bda08g01363 Bda-Chr8:54121845 Bda13g01473 Bda-Chr13:37627034 5.12E-64 dispersed
Bda13g01473 Bda-Chr13:37627034 Bda11g00693 Bda-Chr11:6914682 6.57E-33 dispersed
Bda01g01454 Bda-Chr1:50454887 Bda13g01473 Bda-Chr13:37627034 5.26E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01473 K06627 - mnt:21396560 560.836