Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g01478 ATGACCGAAGTAGTCTCTTTAATGGACGTCGATAACGATGACCACAATCGTTCTCTCAAACCTAGCAAGGGCAAAAATGTTGTCGTTTCGGGCACTACCCCCGACGGCAAAGCCACACCCTGGGTTGAGAAGTACCGCCCTCAGTCTCTTGCAGACGTTGCTGCCCATCGAGATATCGTCGATACCATTGATAGGCTTACCAGCGAGAATAGGTTGCCACATCTCCTGTTATATGGTCCTCCAGGTACTGGAAAAACATCGACCATTCTTGCTGTTGCACGGAAGCTTTATGGAGCACGCTACCACAATATGATACTCGAGCTGAATGCATCAGATGATAGGGGAATTGACGTTGTGAGGCAACAGATCCAGGATTTTGCTAGTACTCAAAGCTTCTCATTTGGGGCGAAGTCCTCAGTGAAATTGGTATTGTTAGACGAGGCGGATGCCATGACAAAAGATGCACAGTTTGCATTGCGTAGAGTTATCGAGAAATACACCAAGAACACTAGATTTGCACTTATATGCAATCATGTCAATAAGATTATTCCAGCCTTACAGTCAAGATGTACACGCTTTCGTTTTCCCCCCCTTGACAACGTCCATGTTACCGACCGGCTCAAATATGTTATAGAAGCTGAAATGCTCGATGTACCTGAGAAAGGATTAGCAGCACTTGTTCGTCTTAGCAATGGTGACATGAGAAAGGCTTTGAACATTTTGCAGTCAACACATATGGCTTCTAATCAGATAACAGAGGAAGCTGTCTATCTGTGCACTGGAAATCCAATGCCCAAGGACATAGAGCAAATATCTTACTGGCTTCTGAATGAACCATTTGCAGAAAGTTTCAGAAGGATATCTGAAATCAAGTCAAAAAAAGGACTTGCCTTGGTTGATATTGTAAGAGAAGTGACCATGTTTGTTTTCAAGATTACGATGCCGGCAGATGTTCGAGTTCAACTAATAAATGATTTGGCCGACATTGAGTACCGATTGACTTTTGGGTGCAATGATAAGTTGCAGCTTGGATCCCTCATCGCGACTTTCACCCAAGCTCGATCCATGCTAGTTCTTGCCGCAAAGTAG 1089 44.26 MTEVVSLMDVDNDDHNRSLKPSKGKNVVVSGTTPDGKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGARYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFPPLDNVHVTDRLKYVIEAEMLDVPEKGLAALVRLSNGDMRKALNILQSTHMASNQITEEAVYLCTGNPMPKDIEQISYWLLNEPFAESFRRISEIKSKKGLALVDIVREVTMFVFKITMPADVRVQLINDLADIEYRLTFGCNDKLQLGSLIATFTQARSMLVLAAK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37675193 37679261 - Bda000322.1 Bda13g01478 19609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g01478 362 Pfam ATPase family associated with various cellular activities (AAA) 75 194 IPR003959 GO:0005524|GO:0016887
Bda13g01478 362 Gene3D - 35 196 IPR027417 -
Bda13g01478 362 Gene3D - 201 262 - -
Bda13g01478 362 PANTHER REPLICATION FACTOR C SUBUNIT 5 36 357 - -
Bda13g01478 362 Pfam Replication factor C C-terminal domain 263 348 IPR013748 -
Bda13g01478 362 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 36 357 - -
Bda13g01478 362 CDD AAA 59 197 - -
Bda13g01478 362 Gene3D - 263 360 - -
Bda13g01478 362 SUPERFAMILY post-AAA+ oligomerization domain-like 263 354 IPR008921 GO:0003677|GO:0006260
Bda13g01478 362 SMART AAA_5 71 202 IPR003593 -
Bda13g01478 362 CDD HLD_clamp_RFC 198 260 - -
Bda13g01478 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 256 IPR027417 -
Bda13g01478 362 MobiDBLite consensus disorder prediction 1 32 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda11g00726 Bda13g01478 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00427 Bda-Chr8:4313455 Bda13g01478 Bda-Chr13:37675193 2.91E-12 dispersed
Bda08g00530 Bda-Chr8:5300999 Bda13g01478 Bda-Chr13:37675193 1.05E-69 dispersed
Bda09g00824 Bda-Chr9:17747765 Bda13g01478 Bda-Chr13:37675193 6.52E-11 dispersed
Bda11g00296 Bda-Chr11:3354230 Bda13g01478 Bda-Chr13:37675193 7.51E-17 dispersed
Bda11g00726 Bda-Chr11:7244315 Bda13g01478 Bda-Chr13:37675193 4.60E-36 dispersed
Bda03g00016 Bda-Chr3:377462 Bda13g01478 Bda-Chr13:37675193 3.81E-65 transposed
Bda04g01061 Bda-Chr4:61619530 Bda13g01478 Bda-Chr13:37675193 1.10E-08 transposed
Bda13g00020 Bda-Chr13:368117 Bda13g01478 Bda-Chr13:37675193 1.22E-11 transposed
Bda01g01451 Bda-Chr1:50441783 Bda13g01478 Bda-Chr13:37675193 2.22E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g01478 K10756 - tcc:18592371 629.787